Variant report

Variant	rs12854177
Chromosome Location	chr13:76221844-76221845
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12871896	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12872251	1.00[AFR][1000 genomes]
rs34258592	1.00[AFR][1000 genomes]
rs34890868	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35138645	1.00[AFR][1000 genomes]
rs35634098	1.00[AFR][1000 genomes]
rs71434806	1.00[AFR][1000 genomes]
rs71434808	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751152	chr13:76144199-76288418	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv949152	chr13:76211453-76366622	Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:76211400-76226200	Weak transcription	Left Ventricle	heart
2	chr13:76211600-76232800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr13:76211600-76235600	Weak transcription	Ovary	ovary
4	chr13:76211600-76235600	Weak transcription	Pancreas	Pancrea
5	chr13:76211800-76230000	Weak transcription	Thymus	Thymus
6	chr13:76212000-76223200	Weak transcription	Fetal Stomach	stomach
7	chr13:76212200-76235600	Weak transcription	Aorta	Aorta
8	chr13:76212400-76230000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr13:76212400-76240400	Weak transcription	HMEC	breast
10	chr13:76212600-76222800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr13:76212800-76224600	Weak transcription	Fetal Kidney	kidney
12	chr13:76213400-76267800	Weak transcription	Primary T cells from cord blood	blood
13	chr13:76213800-76235600	Weak transcription	Psoas Muscle	Psoas
14	chr13:76215400-76258200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr13:76215600-76223600	Genic enhancers	Muscle Satellite Cultured Cells	--
16	chr13:76216200-76229400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr13:76217200-76222000	Genic enhancers	HSMM	muscle
18	chr13:76217400-76223800	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr13:76219800-76223800	Genic enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr13:76220000-76222000	Genic enhancers	NH-A	brain
21	chr13:76220000-76222400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr13:76220200-76223800	Genic enhancers	Osteobl	bone
23	chr13:76220600-76222200	Weak transcription	NHLF	lung
24	chr13:76220600-76222400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr13:76220600-76222600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr13:76220800-76223200	Enhancers	Primary B cells from peripheral blood	blood
27	chr13:76221000-76222000	Transcr. at gene 5' and 3'	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr13:76221000-76222000	Flanking Active TSS	GM12878-XiMat	blood
29	chr13:76221000-76223000	Enhancers	Primary B cells from cord blood	blood
30	chr13:76221200-76222800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr13:76221200-76223600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr13:76221400-76222400	Weak transcription	HSMMtube	muscle
33	chr13:76221600-76223200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr13:76221800-76222000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr13:76221800-76222800	Enhancers	NHDF-Ad	bronchial

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