Variant report

Variant	rs12855007
Chromosome Location	chr13:67691846-67691847
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12864857	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs12865366	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12869004	1.00[CEU][hapmap]
rs12869289	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12876475	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17195217	0.84[EUR][1000 genomes]
rs17195231	1.00[EUR][1000 genomes]
rs17195252	1.00[EUR][1000 genomes]
rs34007733	1.00[EUR][1000 genomes]
rs34439981	1.00[EUR][1000 genomes]
rs35271996	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35346818	1.00[EUR][1000 genomes]
rs4300510	1.00[EUR][1000 genomes]
rs71427632	1.00[EUR][1000 genomes]
rs71427633	1.00[EUR][1000 genomes]
rs71427635	1.00[EUR][1000 genomes]
rs71446831	1.00[EUR][1000 genomes]
rs71446833	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530605	chr13:67126136-67697306	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1035741	chr13:67212973-68077950	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv541817	chr13:67212973-68077950	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv900414	chr13:67515590-67701341	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1045093	chr13:67517932-67693875	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv541821	chr13:67517932-67693875	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv430581	chr13:67572850-67762288	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv430582	chr13:67589898-67762299	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv1037217	chr13:67589937-67728156	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv1039600	chr13:67593961-67726047	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	nsv541823	chr13:67593961-67726047	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
12	nsv1040715	chr13:67668189-67699198	ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv832641	chr13:67671691-67708713	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv1053514	chr13:67687520-67775011	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:67683600-67692000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr13:67688000-67693400	Enhancers	Brain Substantia Nigra	brain
3	chr13:67688400-67695000	Weak transcription	K562	blood
4	chr13:67688800-67693400	Enhancers	Brain Hippocampus Middle	brain
5	chr13:67689600-67701400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr13:67690400-67692000	Enhancers	A549	lung
7	chr13:67690400-67694000	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr13:67690600-67692800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr13:67690800-67692000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr13:67690800-67692200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr13:67691200-67692400	Weak transcription	Brain Anterior Caudate	brain
12	chr13:67691600-67692000	Weak transcription	Brain Cingulate Gyrus	brain
13	chr13:67691600-67692200	Weak transcription	Brain Angular Gyrus	brain
14	chr13:67691600-67692200	Weak transcription	Fetal Brain Female	brain
15	chr13:67691600-67693600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr13:67691800-67692600	Enhancers	Brain Inferior Temporal Lobe	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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