Variant report
| Variant | rs12855055 |
|---|---|
| Chromosome Location | chr13:96319488-96319489 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr13:96319017..96320779-chr13:96328614..96330642,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000102580 | Chromatin interaction |
| ENSG00000247400 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs12583795 | 0.88[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs12583796 | 0.88[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs17885081 | 0.83[AFR][1000 genomes] |
| rs34205636 | 0.80[AMR][1000 genomes] |
| rs35740456 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs3886352 | 0.83[AFR][1000 genomes] |
| rs3901894 | 0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs59576762 | 0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs6492821 | 0.91[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs7316996 | 0.86[AFR][1000 genomes] |
| rs7318892 | 0.90[AFR][1000 genomes] |
| rs7334552 | 0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs7338266 | 0.85[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs7991405 | 0.84[AFR][1000 genomes] |
| rs9302084 | 0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs9561925 | 0.82[EUR][1000 genomes] |
| rs9561931 | 0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs9561935 | 0.81[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs9561936 | 0.82[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs9561939 | 0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs9590310 | 0.87[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv900934 | chr13:96255706-96327574 | Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:96317400-96327000 | ZNF genes & repeats | Liver | Liver |
