Variant report

Variant	rs12859216
Chromosome Location	chr13:51623199-51623200
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11148205	0.94[CHB][hapmap];0.87[JPT][hapmap]
rs11842080	0.94[CHB][hapmap];0.87[JPT][hapmap];0.86[ASN][1000 genomes]
rs12871332	0.94[CHB][hapmap];0.87[JPT][hapmap]
rs12877403	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3790015	0.88[CHB][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs3790017	0.81[ASN][1000 genomes]
rs3803198	0.94[CHB][hapmap];0.87[JPT][hapmap]
rs3803199	0.94[CHB][hapmap];0.87[JPT][hapmap]
rs3803200	0.94[CHB][hapmap];0.87[JPT][hapmap]
rs913467	0.94[CHB][hapmap];0.84[ASN][1000 genomes]
rs927992	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9526717	0.94[CHB][hapmap];0.87[JPT][hapmap];0.87[ASN][1000 genomes]
rs9563015	0.94[CHB][hapmap];0.87[JPT][hapmap]
rs9563018	0.94[CHB][hapmap];0.87[JPT][hapmap]
rs9568502	0.94[CHB][hapmap];0.87[JPT][hapmap]
rs9568503	0.94[CHB][hapmap];0.87[JPT][hapmap]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51621000-51623400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr13:51621800-51623200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr13:51622200-51623200	Enhancers	Fetal Intestine Small	intestine
4	chr13:51622200-51623400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links