Variant report

Variant	rs12865366
Chromosome Location	chr13:67713952-67713953
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12855007	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12864857	1.00[CEU][hapmap]
rs12869004	1.00[CEU][hapmap]
rs12869289	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs12876475	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17195231	0.84[EUR][1000 genomes]
rs17195252	0.84[EUR][1000 genomes]
rs34007733	0.84[EUR][1000 genomes]
rs34439981	0.84[EUR][1000 genomes]
rs35271996	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35346818	0.84[EUR][1000 genomes]
rs4300510	0.84[EUR][1000 genomes]
rs71427632	0.84[EUR][1000 genomes]
rs71427633	0.84[EUR][1000 genomes]
rs71427635	0.84[EUR][1000 genomes]
rs71446831	0.84[EUR][1000 genomes]
rs71446833	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035741	chr13:67212973-68077950	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv541817	chr13:67212973-68077950	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv430581	chr13:67572850-67762288	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv430582	chr13:67589898-67762299	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1037217	chr13:67589937-67728156	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv1039600	chr13:67593961-67726047	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv541823	chr13:67593961-67726047	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv1053514	chr13:67687520-67775011	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:67709400-67717800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr13:67710200-67721000	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr13:67710400-67715000	Enhancers	A549	lung
4	chr13:67711200-67714200	Enhancers	Brain Anterior Caudate	brain
5	chr13:67711400-67715000	Enhancers	Brain Substantia Nigra	brain
6	chr13:67711600-67714400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr13:67712200-67720600	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr13:67712400-67714400	Weak transcription	Brain Hippocampus Middle	brain
9	chr13:67712800-67717800	Weak transcription	HUVEC	blood vessel
10	chr13:67713200-67714000	Enhancers	Brain Cingulate Gyrus	brain
11	chr13:67713200-67714000	Enhancers	Fetal Heart	heart
12	chr13:67713400-67714000	Flanking Active TSS	Liver	Liver
13	chr13:67713600-67714600	Weak transcription	Brain Angular Gyrus	brain
14	chr13:67713800-67714000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr13:67713800-67714200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr13:67713800-67715000	Enhancers	Brain Inferior Temporal Lobe	brain
17	chr13:67713800-67715200	Weak transcription	Right Atrium	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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