Variant report

Variant	rs12868262
Chromosome Location	chr13:51654841-51654842
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12865698	0.83[AMR][1000 genomes]
rs3803198	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3803199	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3803200	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4606607	0.82[AMR][1000 genomes]
rs9563017	0.85[AMR][1000 genomes]
rs9563018	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9563019	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9563020	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9568505	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832610	chr13:51636661-51822106	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51633400-51657800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr13:51652800-51667000	Weak transcription	Right Atrium	heart
3	chr13:51654200-51655200	Enhancers	Dnd41	blood
4	chr13:51654200-51655200	Active TSS	Hela-S3	cervix
5	chr13:51654200-51657800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr13:51654400-51655000	Active TSS	HUES6 Cell Line	embryonic stem cell
7	chr13:51654400-51655000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr13:51654600-51655200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr13:51654800-51655000	Active TSS	iPS-15b Cell Line	embryonic stem cell
10	chr13:51654800-51655200	Active TSS	Rectal Mucosa Donor 29	rectum
11	chr13:51654800-51655200	Active TSS	A549	lung
12	chr13:51654800-51655200	Active TSS	K562	blood
13	chr13:51654800-51671600	Weak transcription	H1 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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