Variant report

Variant	rs12869289
Chromosome Location	chr13:67645699-67645700
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:67644544..67646111-chr13:67718055..67719973,2	K562	blood:
2	chr13:67644343..67646660-chr13:67649224..67651999,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12855007	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12864857	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12865366	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs12869004	1.00[CEU][hapmap]
rs12876475	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12877253	1.00[AMR][1000 genomes]
rs17195217	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17195231	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17195252	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17791019	1.00[AMR][1000 genomes]
rs34007733	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34439981	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35271996	1.00[EUR][1000 genomes]
rs35346818	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4300510	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71427632	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71427633	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71427635	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71446831	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71446833	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530605	chr13:67126136-67697306	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1035741	chr13:67212973-68077950	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv541817	chr13:67212973-68077950	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv900414	chr13:67515590-67701341	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1045093	chr13:67517932-67693875	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv541821	chr13:67517932-67693875	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv430581	chr13:67572850-67762288	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv430582	chr13:67589898-67762299	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv1037217	chr13:67589937-67728156	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv1039600	chr13:67593961-67726047	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	nsv541823	chr13:67593961-67726047	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:67638400-67649800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr13:67640200-67649200	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr13:67642600-67647200	Enhancers	Brain Hippocampus Middle	brain
4	chr13:67643000-67646400	Weak transcription	Brain Anterior Caudate	brain
5	chr13:67645000-67646600	Enhancers	A549	lung
6	chr13:67645200-67646200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr13:67645200-67646400	Weak transcription	Brain Substantia Nigra	brain
8	chr13:67645400-67646400	Weak transcription	Brain Cingulate Gyrus	brain
9	chr13:67645400-67649200	Weak transcription	Brain Angular Gyrus	brain
10	chr13:67645400-67649600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr13:67645600-67645800	Enhancers	Right Atrium	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links