Variant report

Variant	rs12871506
Chromosome Location	chr13:51153772-51153773
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DLEU7-6	chr13:51153744-51154268	NONHSAT033863

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12869529	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1341638	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1341639	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17074625	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2011671	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34001256	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34447159	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35241241	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35916479	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71436231	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035151	chr13:50513535-51167850	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1254 gene(s)	inside rSNPs	diseases
2	esv2753964	chr13:50545399-51421199	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
3	esv2753492	chr13:50550081-51461720	Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
4	esv2753864	chr13:51136699-51375199	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51147800-51160800	Weak transcription	Dnd41	blood
2	chr13:51149600-51162200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr13:51150000-51153800	Weak transcription	NH-A	brain
4	chr13:51150400-51167400	Weak transcription	HepG2	liver
5	chr13:51150800-51160200	Weak transcription	Fetal Muscle Trunk	muscle
6	chr13:51151000-51155600	Weak transcription	Right Ventricle	heart
7	chr13:51151000-51161800	Weak transcription	Right Atrium	heart
8	chr13:51151200-51153800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr13:51151200-51154200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr13:51151200-51154800	Weak transcription	HSMMtube	muscle
11	chr13:51151200-51155600	Weak transcription	Fetal Thymus	thymus
12	chr13:51151200-51159000	Weak transcription	Left Ventricle	heart
13	chr13:51151200-51169600	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr13:51152800-51154000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr13:51152800-51154200	Enhancers	Fetal Kidney	kidney
16	chr13:51152800-51155000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr13:51153000-51154200	Enhancers	Fetal Heart	heart
18	chr13:51153600-51154000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr13:51153600-51154000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr13:51153600-51154000	Enhancers	Fetal Muscle Leg	muscle
21	chr13:51153600-51156200	Enhancers	Osteobl	bone

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