Variant report

Variant	rs12873300
Chromosome Location	chr13:51576326-51576327
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:51571465..51573416-chr13:51575852..51577394,2	K562	blood:
2	chr13:51567157..51569234-chr13:51575809..51577894,2	MCF-7	breast:
3	chr13:51566822..51568974-chr13:51574662..51576600,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12855373	1.00[CHB][hapmap];0.84[JPT][hapmap];0.94[YRI][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12865703	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34806619	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3790022	1.00[CHB][hapmap];0.84[JPT][hapmap];0.94[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7332630	0.88[CHB][hapmap];0.88[ASN][1000 genomes]
rs7334102	0.93[CHB][hapmap];0.88[ASN][1000 genomes]
rs7996733	0.88[ASN][1000 genomes]
rs7996960	0.88[CHB][hapmap];0.88[ASN][1000 genomes]
rs9316514	0.87[CEU][hapmap];1.00[CHB][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9526715	0.87[CEU][hapmap];1.00[CHB][hapmap];0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9535554	0.85[CEU][hapmap];0.93[CHB][hapmap];0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9535555	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51568000-51579800	Weak transcription	Pancreas	Pancrea
2	chr13:51573800-51577400	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr13:51574000-51576600	Enhancers	Fetal Brain Male	brain
4	chr13:51574000-51577000	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr13:51575200-51576600	Weak transcription	Fetal Intestine Large	intestine
6	chr13:51575200-51576600	Weak transcription	Fetal Intestine Small	intestine
7	chr13:51575400-51578200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr13:51575400-51578400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr13:51575400-51579000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr13:51575400-51579000	Weak transcription	Right Atrium	heart
11	chr13:51575400-51579200	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr13:51575400-51580200	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr13:51575600-51578400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr13:51575600-51578400	Weak transcription	Esophagus	oesophagus
15	chr13:51575600-51578800	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr13:51575600-51579000	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr13:51575600-51579200	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr13:51575600-51579200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr13:51575600-51579800	Weak transcription	Aorta	Aorta
20	chr13:51575800-51577000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr13:51576000-51577800	Weak transcription	Fetal Muscle Leg	muscle
22	chr13:51576000-51579400	Weak transcription	Fetal Thymus	thymus
23	chr13:51576200-51577800	Weak transcription	Brain Germinal Matrix	brain

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