Variant report

Variant	rs12877336
Chromosome Location	chr13:110973086-110973087
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11619822	1.00[CHB][hapmap]
rs7989565	0.83[CEU][hapmap]
rs9515190	0.87[EUR][1000 genomes]
rs9521691	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9521692	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9521693	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9521694	0.82[YRI][hapmap]
rs9521696	0.83[CEU][hapmap]
rs9521725	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038914	chr13:110860219-111190104	Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv1046423	chr13:110936104-111286607	Weak transcription Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv1049454	chr13:110950768-111006547	Strong transcription Flanking Active TSS Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110962000-110978600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr13:110962600-110989200	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr13:110964400-110975600	Weak transcription	Colonic Mucosa	Colon
4	chr13:110965200-110976000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr13:110966600-110976000	Weak transcription	Brain Anterior Caudate	brain
6	chr13:110966800-110979400	Weak transcription	Fetal Brain Male	brain
7	chr13:110969600-110979000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr13:110969800-110973800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr13:110969800-110975600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr13:110969800-110975600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr13:110969800-110980200	Enhancers	Rectal Smooth Muscle	rectum
12	chr13:110969800-110983200	Enhancers	Fetal Heart	heart
13	chr13:110970200-110978800	Weak transcription	Fetal Intestine Large	intestine
14	chr13:110970400-110974600	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr13:110970400-110976000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr13:110970600-110973200	Enhancers	Colon Smooth Muscle	Colon
17	chr13:110971200-110973800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr13:110971400-110973200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr13:110971400-110973400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr13:110971600-110973200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr13:110971600-110973400	Enhancers	Fetal Kidney	kidney
22	chr13:110971600-110974800	Weak transcription	Fetal Intestine Small	intestine
23	chr13:110971800-110973200	Flanking Active TSS	HUVEC	blood vessel
24	chr13:110971800-110973200	Flanking Active TSS	NH-A	brain
25	chr13:110971800-110973200	Flanking Active TSS	NHEK	skin
26	chr13:110971800-110973400	Enhancers	NHLF	lung
27	chr13:110971800-110973600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr13:110971800-110973800	Enhancers	Osteobl	bone
29	chr13:110971800-110976800	Enhancers	NHDF-Ad	bronchial
30	chr13:110972000-110973200	Flanking Active TSS	HMEC	breast
31	chr13:110972000-110973200	Enhancers	HSMM	muscle
32	chr13:110972000-110975400	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr13:110972200-110973600	Enhancers	Pancreatic Islets	Pancreatic Islet
34	chr13:110972200-110974400	Weak transcription	Brain Hippocampus Middle	brain
35	chr13:110972200-110974400	Weak transcription	Pancreas	Pancrea
36	chr13:110972200-110976000	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr13:110972400-110974400	Weak transcription	Fetal Stomach	stomach
38	chr13:110972400-110974400	Weak transcription	Spleen	Spleen
39	chr13:110972400-110974600	Weak transcription	Ovary	ovary
40	chr13:110972400-110974600	Enhancers	Stomach Smooth Muscle	stomach
41	chr13:110972400-110976200	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr13:110972600-110973200	Enhancers	Hela-S3	cervix
43	chr13:110972600-110973800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr13:110972600-110973800	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr13:110972600-110974200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr13:110972600-110974200	Weak transcription	Aorta	Aorta
47	chr13:110972600-110974200	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr13:110972600-110974600	Weak transcription	Lung	lung
49	chr13:110972600-110975400	Weak transcription	Fetal Lung	lung
50	chr13:110972600-110975800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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