Variant report

Variant	rs12878872
Chromosome Location	chr14:65804665-65804666
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65709860..65711374-chr14:65803916..65806781,2	MCF-7	breast:
2	chr14:65802429..65804780-chr14:65808344..65809898,2	MCF-7	breast:
3	chr14:65804493..65806113-chr14:65876032..65878007,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000033170	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11158591	0.86[EUR][1000 genomes]
rs11621121	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11621604	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11623920	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11627402	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11627598	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12880725	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12881755	0.91[ASN][1000 genomes]
rs12881911	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12882269	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12886005	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12886168	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12893094	0.81[AMR][1000 genomes]
rs12895337	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1815654	0.87[EUR][1000 genomes]
rs1954052	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4899174	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902391	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4902393	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7143666	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7152441	0.87[ASN][1000 genomes]
rs7157006	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7158347	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs747541	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8014475	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8022094	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832817	chr14:65637069-65810406	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
2	nsv832818	chr14:65706859-65882320	Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
4	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
5	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65796000-65807200	Enhancers	Placenta	Placenta
2	chr14:65799200-65805400	Enhancers	Fetal Intestine Large	intestine
3	chr14:65800200-65805400	Enhancers	Fetal Intestine Small	intestine
4	chr14:65801600-65805800	Enhancers	Duodenum Mucosa	Duodenum
5	chr14:65803400-65806600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr14:65803400-65806600	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr14:65803400-65806800	Weak transcription	Gastric	stomach
8	chr14:65803400-65811600	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr14:65803400-65813200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr14:65803400-65813200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr14:65803400-65813400	Weak transcription	NHLF	lung
12	chr14:65803400-65821000	Weak transcription	Esophagus	oesophagus
13	chr14:65803600-65805000	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr14:65803600-65805000	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr14:65803600-65806800	Weak transcription	NHDF-Ad	bronchial
16	chr14:65804000-65804800	Weak transcription	Small Intestine	intestine
17	chr14:65804000-65805000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr14:65804000-65805000	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr14:65804600-65805400	Enhancers	Stomach Mucosa	stomach

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