Variant report

Variant	rs12879990
Chromosome Location	chr14:35582072-35582073
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TAL1	chr14:35581911-35582114	K562	blood:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:35579884..35582908-chr14:35589580..35593400,4	MCF-7	breast:
2	chr14:35575108..35577004-chr14:35580748..35582498,2	MCF-7	breast:
3	chr14:35577086..35580056-chr14:35580213..35583818,4	MCF-7	breast:
4	chr14:35580705..35582732-chr14:35589834..35592713,2	K562	blood:
5	chr14:35578569..35580087-chr14:35582011..35583731,2	K562	blood:
6	chr14:35571820..35573660-chr14:35580909..35583356,2	MCF-7	breast:

No data

Variant related genes	Relation type
PPP2R3C	TF binding region
ENSG00000258790	Chromatin interaction
ENSG00000092020	Chromatin interaction
ENSG00000100890	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10140974	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12878409	0.86[EUR][1000 genomes]
rs12884879	0.86[EUR][1000 genomes]
rs28498415	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2891299	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34345349	0.86[EUR][1000 genomes]
rs34349910	1.00[EUR][1000 genomes]
rs34380272	0.86[EUR][1000 genomes]
rs34482760	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35279146	0.81[EUR][1000 genomes]
rs35447952	0.86[EUR][1000 genomes]
rs55775137	0.86[EUR][1000 genomes]
rs55831988	0.96[EUR][1000 genomes]
rs55994324	0.86[EUR][1000 genomes]
rs56228866	0.86[EUR][1000 genomes]
rs71421928	0.86[EUR][1000 genomes]
rs72664833	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:29 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949617	chr14:35379923-35825436	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv1043470	chr14:35398522-35754029	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
3	nsv542031	chr14:35398522-35754029	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
4	nsv901609	chr14:35449467-35587767	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
5	nsv901613	chr14:35470049-35587767	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
6	nsv564264	chr14:35482797-35732369	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
7	nsv901615	chr14:35485748-35630175	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
8	nsv870305	chr14:35488290-35852349	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
9	nsv1052800	chr14:35509858-35607117	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
10	nsv1044515	chr14:35510785-35756317	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
11	nsv564265	chr14:35512335-35624831	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
12	nsv1046992	chr14:35527239-35724227	Flanking Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
13	nsv1051274	chr14:35529529-35724227	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
14	nsv1048823	chr14:35537281-35724892	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
15	nsv542032	chr14:35537281-35724892	Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
16	nsv1040540	chr14:35537481-35724753	Strong transcription Weak transcription Genic enhancers Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
17	nsv542033	chr14:35537481-35724753	Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
18	nsv1042625	chr14:35546094-35680358	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
19	nsv1050123	chr14:35546114-35724892	Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
20	nsv542034	chr14:35546114-35724892	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
21	nsv1050700	chr14:35548276-35639084	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
22	nsv1043692	chr14:35548276-35720016	Weak transcription Strong transcription Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
23	nsv1053604	chr14:35548276-35825805	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
24	nsv542035	chr14:35563220-35607117	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
25	nsv1047992	chr14:35563220-35639084	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
26	nsv1052392	chr14:35563220-35893309	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	83 gene(s)	inside rSNPs	diseases
27	nsv542036	chr14:35563220-35893309	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	83 gene(s)	inside rSNPs	diseases
28	nsv1053978	chr14:35571762-35639084	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
29	nsv534182	chr14:35579022-35620232	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:35529400-35590200	Weak transcription	Esophagus	oesophagus
2	chr14:35530600-35590000	Weak transcription	Fetal Heart	heart
3	chr14:35542000-35589600	Weak transcription	Fetal Brain Male	brain
4	chr14:35545600-35582800	Strong transcription	Primary T helper cells fromperipheralblood	blood
5	chr14:35545600-35590000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr14:35546000-35585800	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr14:35546000-35587200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr14:35546200-35585000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr14:35550200-35586000	Strong transcription	Primary neutrophils fromperipheralblood	blood
10	chr14:35552000-35586600	Strong transcription	Fetal Thymus	thymus
11	chr14:35553400-35589800	Weak transcription	Pancreas	Pancrea
12	chr14:35564200-35589400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr14:35564800-35589800	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr14:35569400-35585800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr14:35571600-35585200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr14:35571600-35585200	Strong transcription	Liver	Liver
17	chr14:35571800-35583600	Strong transcription	Rectal Mucosa Donor 29	rectum
18	chr14:35573400-35583400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr14:35573600-35584800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr14:35573600-35584800	Strong transcription	Fetal Muscle Trunk	muscle
21	chr14:35573600-35586400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr14:35574800-35584800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr14:35575200-35582800	Strong transcription	Fetal Lung	lung
24	chr14:35575200-35586200	Strong transcription	Primary T cells fromperipheralblood	blood
25	chr14:35575200-35587000	Strong transcription	Fetal Intestine Large	intestine
26	chr14:35575400-35583400	Strong transcription	Stomach Smooth Muscle	stomach
27	chr14:35575600-35585200	Strong transcription	Adipose Nuclei	Adipose
28	chr14:35575800-35583400	Strong transcription	Osteobl	bone
29	chr14:35576200-35584800	Strong transcription	Fetal Brain Female	brain
30	chr14:35576600-35584800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr14:35577600-35584800	Strong transcription	Left Ventricle	heart
32	chr14:35577600-35586600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr14:35577600-35587200	Strong transcription	Thymus	Thymus
34	chr14:35577600-35589800	Strong transcription	Fetal Stomach	stomach
35	chr14:35578000-35583400	Strong transcription	Right Ventricle	heart
36	chr14:35578200-35583000	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr14:35578200-35583200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr14:35578400-35583000	Strong transcription	Placenta	Placenta
39	chr14:35578400-35584800	Strong transcription	Primary T helper cells PMA-I stimulated	--
40	chr14:35578600-35583000	Strong transcription	Colon Smooth Muscle	Colon
41	chr14:35578600-35584800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
42	chr14:35578600-35584800	Strong transcription	Skeletal Muscle Female	skeletal muscle
43	chr14:35578600-35586000	Strong transcription	Primary B cells from peripheral blood	blood
44	chr14:35578800-35582800	Strong transcription	Lung	lung
45	chr14:35578800-35583000	Strong transcription	Small Intestine	intestine
46	chr14:35578800-35583200	Strong transcription	Primary T cells from cord blood	blood
47	chr14:35578800-35583200	Strong transcription	Brain Substantia Nigra	brain
48	chr14:35578800-35583200	Strong transcription	HSMMtube	muscle
49	chr14:35578800-35583400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr14:35578800-35583400	Strong transcription	Brain Anterior Caudate	brain

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