Variant report

Variant	rs12891657
Chromosome Location	chr14:72448162-72448163
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10483837	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12885258	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12888615	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12888760	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12893646	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12896825	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12897542	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2067854	0.92[AMR][1000 genomes]
rs2877774	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34328930	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs36139360	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs71427144	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs764625	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs929444	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72442800-72450200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr14:72442800-72450200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr14:72446000-72457000	Weak transcription	Right Ventricle	heart
4	chr14:72448000-72449000	Active TSS	ES-I3 Cell Line	embryonic stem cell
5	chr14:72448000-72449000	Active TSS	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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