Variant report

Variant	rs12891850
Chromosome Location	chr14:37971612-37971613
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1011818	0.81[EUR][1000 genomes]
rs10132039	0.82[EUR][1000 genomes]
rs10132119	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10133391	0.86[AFR][1000 genomes]
rs10135206	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10138614	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10143976	0.82[EUR][1000 genomes]
rs10145135	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10150051	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11156952	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1155456	0.81[EUR][1000 genomes]
rs11560071	0.81[EUR][1000 genomes]
rs1169871	0.82[EUR][1000 genomes]
rs1169872	0.82[EUR][1000 genomes]
rs1169873	0.82[EUR][1000 genomes]
rs12147950	0.81[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs12435038	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12437250	0.82[EUR][1000 genomes]
rs1950517	0.83[EUR][1000 genomes]
rs1950819	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1950821	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1955950	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1956427	0.82[EUR][1000 genomes]
rs1956433	0.82[EUR][1000 genomes]
rs1956434	0.82[EUR][1000 genomes]
rs1956435	0.82[EUR][1000 genomes]
rs1956436	0.82[EUR][1000 genomes]
rs2064669	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2146133	0.82[EUR][1000 genomes]
rs2208211	0.81[EUR][1000 genomes]
rs2415400	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2899860	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35005938	0.81[EUR][1000 genomes]
rs4444242	0.81[EUR][1000 genomes]
rs4900889	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4900918	0.82[EUR][1000 genomes]
rs4900958	0.87[AFR][1000 genomes]
rs6571814	0.82[EUR][1000 genomes]
rs6571815	0.82[EUR][1000 genomes]
rs7146299	0.80[EUR][1000 genomes]
rs7148547	0.81[EUR][1000 genomes]
rs7153426	0.81[EUR][1000 genomes]
rs7159004	0.82[EUR][1000 genomes]
rs9322980	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530038	chr14:37590543-38336191	Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv915783	chr14:37607836-38002966	Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1036854	chr14:37609535-38013533	Active TSS ZNF genes & repeats Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv542045	chr14:37609535-38013533	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv901639	chr14:37743583-38038468	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
6	nsv564349	chr14:37890433-38034434	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
7	nsv901641	chr14:37939401-38040755	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:37960200-37975400	Weak transcription	HUVEC	blood vessel
2	chr14:37969200-37989600	Weak transcription	Left Ventricle	heart
3	chr14:37969400-37971800	Strong transcription	HepG2	liver
4	chr14:37969800-37972200	Weak transcription	Rectal Smooth Muscle	rectum
5	chr14:37970000-37972200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr14:37970000-37972400	Weak transcription	Fetal Muscle Leg	muscle
7	chr14:37970200-37972000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr14:37970200-37972400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr14:37970200-37972600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr14:37970200-37972600	Weak transcription	Fetal Lung	lung
11	chr14:37970200-37972800	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr14:37970600-37995200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr14:37970800-37971800	Strong transcription	Fetal Stomach	stomach
14	chr14:37970800-37972000	Strong transcription	Stomach Smooth Muscle	stomach
15	chr14:37971400-37971800	Weak transcription	Spleen	Spleen
16	chr14:37971400-37972800	Weak transcription	Fetal Muscle Trunk	muscle
17	chr14:37971400-37973000	Weak transcription	Right Ventricle	heart
18	chr14:37971400-37973000	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr14:37971400-37973000	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr14:37971400-37973600	Weak transcription	Ovary	ovary
21	chr14:37971400-37984000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr14:37971600-37972000	Weak transcription	Aorta	Aorta
23	chr14:37971600-37973200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr14:37971600-37973200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr14:37971600-37973200	Weak transcription	Adipose Nuclei	Adipose
26	chr14:37971600-37975200	Weak transcription	Duodenum Smooth Muscle	Duodenum

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