Variant report

Variant	rs12892230
Chromosome Location	chr14:37526211-37526212
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10133042	0.84[EUR][1000 genomes]
rs10133820	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10135756	0.84[EUR][1000 genomes]
rs10136755	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10136870	0.84[EUR][1000 genomes]
rs10137539	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10137611	0.84[EUR][1000 genomes]
rs10139726	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10143832	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10483486	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12879259	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12892728	0.84[EUR][1000 genomes]
rs12897058	0.84[EUR][1000 genomes]
rs12897101	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13353107	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1535239	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17106164	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2180600	0.85[EUR][1000 genomes]
rs2415374	0.85[EUR][1000 genomes]
rs2415375	0.85[EUR][1000 genomes]
rs2415376	0.85[EUR][1000 genomes]
rs28466578	0.83[EUR][1000 genomes]
rs34592617	0.84[EUR][1000 genomes]
rs34781881	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35341876	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs36105433	0.84[EUR][1000 genomes]
rs4408459	0.84[EUR][1000 genomes]
rs58079830	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6571776	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6571777	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs714269	0.84[EUR][1000 genomes]
rs7143414	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7149154	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7149490	0.84[EUR][1000 genomes]
rs8008894	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8008912	0.83[EUR][1000 genomes]
rs8011715	0.85[EUR][1000 genomes]
rs8014914	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8015845	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8016567	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9919903	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534288	chr14:37254539-37697745	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1036201	chr14:37498841-37542041	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1037719	chr14:37498841-37546359	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv526786	chr14:37499904-37537352	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1048854	chr14:37505438-37546359	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:37525800-37526400	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr14:37525800-37526400	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr14:37525800-37526400	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr14:37525800-37526400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr14:37525800-37526400	Enhancers	HSMMtube	muscle
6	chr14:37525800-37526600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr14:37525800-37526600	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr14:37525800-37526600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr14:37525800-37526600	Enhancers	Fetal Heart	heart
10	chr14:37525800-37526600	Enhancers	HSMM	muscle
11	chr14:37525800-37527200	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr14:37525800-37527200	Enhancers	Muscle Satellite Cultured Cells	--
13	chr14:37526000-37526800	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr14:37526000-37527200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr14:37526000-37529000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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