Variant report

Variant	rs12896132
Chromosome Location	chr14:33131515-33131516
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:33129614..33131625-chr14:33133095..33135565,2	MCF-7	breast:
2	chr14:33131208..33133254-chr14:33134541..33137276,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10130459	0.88[CHB][hapmap];0.88[CHD][hapmap];0.93[GIH][hapmap];0.81[ASN][1000 genomes]
rs10135053	0.88[CHB][hapmap];0.88[CHD][hapmap];0.93[GIH][hapmap]
rs1033678	0.88[CHB][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11625087	0.88[CHB][hapmap];0.93[GIH][hapmap];0.81[ASN][1000 genomes]
rs12895848	0.80[AMR][1000 genomes]
rs1884618	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1956203	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4981992	0.86[GIH][hapmap]
rs4981995	0.81[ASN][1000 genomes]
rs6571547	0.88[CHB][hapmap];0.88[CHD][hapmap];0.97[GIH][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes]
rs6571548	1.00[ASW][hapmap];0.96[CEU][hapmap];0.88[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.89[MKK][hapmap];0.95[TSI][hapmap];0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7152044	0.81[ASN][1000 genomes]
rs7153048	0.92[CEU][hapmap];1.00[GIH][hapmap];0.83[MEX][hapmap];0.89[TSI][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7156763	0.88[CHB][hapmap];0.81[ASN][1000 genomes]
rs7157533	0.90[GIH][hapmap]
rs7157744	0.90[GIH][hapmap]
rs7160156	0.93[GIH][hapmap]
rs927060	0.88[CHB][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045035	chr14:32986003-33543227	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv542021	chr14:32986003-33543227	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv428624	chr14:33065571-33214223	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12896132	STRN3	cis	parietal	SCAN

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:33115000-33134400	Weak transcription	Psoas Muscle	Psoas
2	chr14:33117800-33149200	Weak transcription	Colon Smooth Muscle	Colon
3	chr14:33121000-33134200	Weak transcription	Fetal Muscle Leg	muscle
4	chr14:33126400-33132800	Weak transcription	Esophagus	oesophagus
5	chr14:33126600-33131800	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr14:33126600-33134800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr14:33126800-33131600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr14:33126800-33131800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr14:33127200-33131600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr14:33127400-33131600	Weak transcription	Brain Cingulate Gyrus	brain
11	chr14:33127400-33136200	Weak transcription	Brain Hippocampus Middle	brain
12	chr14:33129200-33133600	Enhancers	Fetal Heart	heart
13	chr14:33130400-33132000	Enhancers	NHDF-Ad	bronchial
14	chr14:33130600-33131800	Enhancers	Brain Anterior Caudate	brain
15	chr14:33131000-33131600	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr14:33131000-33131800	Enhancers	Brain Substantia Nigra	brain
17	chr14:33131000-33132000	Enhancers	Brain Inferior Temporal Lobe	brain
18	chr14:33131000-33134600	Weak transcription	Left Ventricle	heart
19	chr14:33131000-33134800	Weak transcription	Right Ventricle	heart
20	chr14:33131000-33144200	Weak transcription	HSMMtube	muscle
21	chr14:33131200-33132000	Enhancers	Osteobl	bone
22	chr14:33131200-33134000	Weak transcription	Aorta	Aorta
23	chr14:33131400-33132000	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr14:33131400-33132000	Enhancers	Muscle Satellite Cultured Cells	--
25	chr14:33131400-33132200	Enhancers	Brain Angular Gyrus	brain

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