Variant report

Variant	rs12896825
Chromosome Location	chr14:72449119-72449120
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10483837	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12884777	0.86[CEU][hapmap]
rs12885258	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12888615	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12888760	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12891657	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12891745	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12893646	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12897542	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17104975	0.90[CEU][hapmap]
rs17768231	1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap]
rs17768243	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2067854	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes]
rs2283422	0.86[CEU][hapmap]
rs2877774	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34328930	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36139360	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902961	0.90[CEU][hapmap]
rs71427144	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs714975	1.00[CHB][hapmap];0.88[CHD][hapmap]
rs7156200	0.86[CEU][hapmap]
rs764625	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs929444	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72442800-72450200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr14:72442800-72450200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr14:72446000-72457000	Weak transcription	Right Ventricle	heart
4	chr14:72448800-72449200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
5	chr14:72449000-72449200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr14:72449000-72449200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
7	chr14:72449000-72449200	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr14:72449000-72449400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell

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