Variant report

Variant	rs12896860
Chromosome Location	chr14:97132320-97132321
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:97049843..97051026-chr14:97131982..97133064,8	MCF-7	breast:
2	chr14:97130230..97132435-chr14:97152874..97154643,2	MCF-7	breast:
3	chr14:97050109..97051246-chr14:97131819..97133058,6	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10130476	0.80[EUR][1000 genomes]
rs10136134	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10141649	0.94[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10150451	0.80[EUR][1000 genomes]
rs11160352	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11847868	0.80[EUR][1000 genomes]
rs12433618	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12433759	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12436391	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12878650	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12879867	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12883480	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34048492	0.80[EUR][1000 genomes]
rs34621644	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs35530033	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs35929844	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs61590485	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs71415046	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs71415047	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7149324	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7149470	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7149471	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7150945	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8009802	0.80[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs9972123	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9972176	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048302	chr14:97000845-97250538	Bivalent/Poised TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1041078	chr14:97001679-97279220	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv1050075	chr14:97004951-97279220	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv431026	chr14:97079926-97163106	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv565651	chr14:97097653-97137681	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:97128000-97132400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr14:97128000-97135200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr14:97131400-97134000	Weak transcription	Brain Germinal Matrix	brain
4	chr14:97131800-97132400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr14:97132200-97132800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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