Variant report

Variant	rs12896897
Chromosome Location	chr14:106167295-106167296
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12433324	0.88[ASN][1000 genomes]
rs12896746	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34398108	0.96[ASN][1000 genomes]
rs61986171	0.84[ASN][1000 genomes]
rs62639532	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs71424600	0.83[ASN][1000 genomes]
rs7143677	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7144319	0.90[EUR][1000 genomes]
rs7145407	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530813	chr14:105607701-106453697	Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	149 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12896897	IGHJ6	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:106165400-106169400	Enhancers	Primary B cells from cord blood	blood
2	chr14:106166000-106169200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr14:106166200-106167400	Flanking Active TSS	GM12878-XiMat	blood
4	chr14:106166200-106169400	Genic enhancers	Primary B cells from peripheral blood	blood
5	chr14:106166200-106174600	Weak transcription	Spleen	Spleen
6	chr14:106167200-106167600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr14:106167200-106168200	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr14:106167200-106168200	Enhancers	Placenta	Placenta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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