Variant report

Variant	rs12897618
Chromosome Location	chr14:70412878-70412879
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:70412865..70415128-chr14:70415541..70417322,2	MCF-7	breast:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs1007288	0.97[ASN][1000 genomes]
rs10139510	0.96[ASN][1000 genomes]
rs10140088	0.96[ASN][1000 genomes]
rs10141617	0.97[ASN][1000 genomes]
rs10142998	0.97[ASN][1000 genomes]
rs10143792	0.96[ASN][1000 genomes]
rs10150210	0.98[ASN][1000 genomes]
rs10220692	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1037801	0.95[ASN][1000 genomes]
rs1037802	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1040905	0.94[ASN][1000 genomes]
rs11848845	0.96[ASN][1000 genomes]
rs11849125	0.96[ASN][1000 genomes]
rs11849133	0.96[ASN][1000 genomes]
rs12586293	0.96[ASN][1000 genomes]
rs12589352	0.94[ASN][1000 genomes]
rs12590177	0.97[ASN][1000 genomes]
rs12881989	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12883649	0.95[ASN][1000 genomes]
rs12885374	0.95[ASN][1000 genomes]
rs12885763	0.94[ASN][1000 genomes]
rs12889706	0.96[ASN][1000 genomes]
rs1380430	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1380431	0.96[ASN][1000 genomes]
rs1459700	0.96[ASN][1000 genomes]
rs1547088	0.99[ASN][1000 genomes]
rs1585374	0.95[ASN][1000 genomes]
rs1585375	0.94[ASN][1000 genomes]
rs170566	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17107501	0.94[ASN][1000 genomes]
rs186599	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1903200	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2035011	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs227448	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34833758	0.96[ASN][1000 genomes]
rs3742909	0.94[ASN][1000 genomes]
rs6573918	0.96[ASN][1000 genomes]
rs6573919	0.94[ASN][1000 genomes]
rs67295508	0.96[ASN][1000 genomes]
rs7142362	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7145638	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7148145	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7149785	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7152091	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7157289	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7157956	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8003166	0.96[ASN][1000 genomes]
rs8004069	0.96[ASN][1000 genomes]
rs8011726	0.96[ASN][1000 genomes]
rs927413	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs984036	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456336	chr14:70081956-70574149	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv565007	chr14:70081956-70574149	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
3	nsv832824	chr14:70320639-70511401	Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70409800-70413200	Enhancers	Liver	Liver
2	chr14:70410000-70415800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr14:70410600-70413000	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr14:70410600-70413600	ZNF genes & repeats	Hela-S3	cervix
5	chr14:70410600-70414200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr14:70411600-70413200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr14:70412200-70415800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr14:70412400-70413000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr14:70412400-70414400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr14:70412400-70417200	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr14:70412800-70413000	Enhancers	Gastric	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links