Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:72410955..72413262-chr14:72418507..72421384,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11158920	0.84[ASN][1000 genomes]
rs11158921	0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs11158926	0.82[CEU][hapmap];0.93[CHB][hapmap]
rs12433721	0.83[ASN][1000 genomes]
rs12434220	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12437172	0.86[ASN][1000 genomes]
rs1476745	0.88[CHB][hapmap];0.88[CHD][hapmap];0.88[MEX][hapmap];0.87[TSI][hapmap]
rs17768361	0.88[CHB][hapmap];0.88[CHD][hapmap];0.88[MEX][hapmap];0.87[TSI][hapmap]
rs2067856	0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs2159457	0.81[CHB][hapmap];0.93[JPT][hapmap];0.89[ASN][1000 genomes]
rs2190864	1.00[CHB][hapmap];0.82[JPT][hapmap];0.92[ASN][1000 genomes]
rs2238280	0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs2877771	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34729701	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35051666	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35858041	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs36318	0.96[CEU][hapmap];0.91[TSI][hapmap];0.90[EUR][1000 genomes]
rs3784058	0.83[ASN][1000 genomes]
rs4899409	0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs56067914	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72734102	0.89[ASN][1000 genomes]
rs72735921	0.89[ASN][1000 genomes]
rs72735923	0.89[ASN][1000 genomes]
rs728497	0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs7493353	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs12897929	ACOT2	cis	parietal	SCAN
rs12897929	ACOT4	cis	cerebellum	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72408600-72412600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr14:72409400-72412600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr14:72410600-72412400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr14:72410600-72425400	Weak transcription	Left Ventricle	heart
5	chr14:72411000-72412800	Weak transcription	GM12878-XiMat	blood
6	chr14:72411600-72412400	Weak transcription	Primary hematopoietic stem cells	blood
7	chr14:72411800-72415600	Strong transcription	Cortex derived primary cultured neurospheres	brain

Quick Search: