Variant report

Variant	rs12905283
Chromosome Location	chr15:52089431-52089432
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:52088548..52091371-chr15:52091695..52094863,3	K562	blood:
2	chr15:52087845..52094257-chr15:52120068..52124048,9	MCF-7	breast:
3	chr15:52087804..52093803-chr15:52117139..52123482,14	MCF-7	breast:
4	chr15:52089220..52092399-chr15:52092458..52095936,3	K562	blood:
5	chr15:52089329..52092071-chr15:52108088..52110534,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138594	Chromatin interaction

Extended variants
information (count: 330 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:328)

rs_ID	r²[population]
rs1001690	0.92[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap]
rs1025184	1.00[CEU][hapmap];0.85[CHB][hapmap];0.82[CHD][hapmap];0.93[GIH][hapmap];0.81[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs1035737	1.00[CEU][hapmap];1.00[GIH][hapmap];0.98[TSI][hapmap];0.89[EUR][1000 genomes]
rs1035739	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10444798	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs10444823	0.85[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10444824	0.96[EUR][1000 genomes]
rs10444825	0.95[EUR][1000 genomes]
rs10775145	0.86[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.91[TSI][hapmap];0.83[YRI][hapmap];0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10851503	0.93[EUR][1000 genomes]
rs10851504	0.90[EUR][1000 genomes]
rs11049	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs11070864	0.89[AMR][1000 genomes]
rs11070865	1.00[CEU][hapmap];0.81[CHB][hapmap];0.95[GIH][hapmap];0.93[TSI][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11070866	0.88[EUR][1000 genomes]
rs11070867	0.88[EUR][1000 genomes]
rs11070868	1.00[CEU][hapmap];0.81[CHB][hapmap];0.80[CHD][hapmap];1.00[GIH][hapmap];0.87[MKK][hapmap];0.98[TSI][hapmap];0.94[EUR][1000 genomes]
rs11070869	0.94[EUR][1000 genomes]
rs1133883	1.00[CEU][hapmap]
rs11630084	0.86[CHB][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs11630253	0.88[EUR][1000 genomes]
rs11630579	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs11630943	1.00[CEU][hapmap];0.81[CHB][hapmap];0.80[CHD][hapmap];1.00[GIH][hapmap];0.87[MKK][hapmap];0.98[TSI][hapmap];0.94[EUR][1000 genomes]
rs11631858	0.96[EUR][1000 genomes]
rs11632106	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs11636345	0.84[ASW][hapmap];0.86[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.91[TSI][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11636869	0.94[EUR][1000 genomes]
rs11637876	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[GIH][hapmap];0.98[TSI][hapmap];0.95[EUR][1000 genomes]
rs11638161	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11638677	0.87[EUR][1000 genomes]
rs11638766	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs11638820	0.83[ASW][hapmap];0.86[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.89[TSI][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs12050524	0.96[EUR][1000 genomes]
rs12438686	0.82[CHB][hapmap];0.84[ASN][1000 genomes]
rs12591672	0.90[EUR][1000 genomes]
rs12593708	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs12901638	0.90[EUR][1000 genomes]
rs12903500	0.86[EUR][1000 genomes]
rs12903707	0.94[ASW][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12904413	0.94[EUR][1000 genomes]
rs12904900	0.94[EUR][1000 genomes]
rs12908327	1.00[CEU][hapmap];1.00[GIH][hapmap];0.98[TSI][hapmap];0.94[EUR][1000 genomes]
rs12912928	0.94[EUR][1000 genomes]
rs12913583	0.95[EUR][1000 genomes]
rs12913850	0.93[EUR][1000 genomes]
rs12915015	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs12915568	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs12917133	0.89[ASW][hapmap];0.86[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.91[TSI][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1350174	0.89[ASW][hapmap];0.82[GIH][hapmap];0.84[LWK][hapmap];0.91[MEX][hapmap];0.85[MKK][hapmap];0.85[TSI][hapmap];0.91[AMR][1000 genomes]
rs1466276	0.84[AMR][1000 genomes]
rs1545602	0.86[CHB][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs17526463	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[GIH][hapmap];0.98[TSI][hapmap];0.96[EUR][1000 genomes]
rs17526760	1.00[CEU][hapmap];1.00[GIH][hapmap];0.98[TSI][hapmap];0.94[EUR][1000 genomes]
rs17539905	0.88[EUR][1000 genomes]
rs17610862	0.94[EUR][1000 genomes]
rs17611193	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[GIH][hapmap];0.98[TSI][hapmap];0.96[EUR][1000 genomes]
rs17612102	0.83[EUR][1000 genomes]
rs17612123	0.84[EUR][1000 genomes]
rs17705732	0.86[CHB][hapmap];0.89[CHD][hapmap];0.85[ASN][1000 genomes]
rs1811326	0.91[CHB][hapmap];0.87[CHD][hapmap];0.89[GIH][hapmap];0.96[MEX][hapmap];0.91[TSI][hapmap];0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1840708	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[GIH][hapmap];0.88[MKK][hapmap];0.95[TSI][hapmap];0.89[EUR][1000 genomes]
rs1863430	1.00[CEU][hapmap];0.81[CHB][hapmap];0.95[EUR][1000 genomes]
rs1867984	0.91[CHB][hapmap];0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1895863	0.81[ASN][1000 genomes]
rs1902430	0.83[ASW][hapmap];0.82[GIH][hapmap];0.86[LWK][hapmap];0.91[MEX][hapmap];0.85[MKK][hapmap];0.85[TSI][hapmap];0.91[AMR][1000 genomes]
rs1972689	0.91[CHB][hapmap];0.87[CHD][hapmap];0.91[GIH][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1991267	0.85[CEU][hapmap]
rs2006773	0.94[EUR][1000 genomes]
rs2007335	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs2007355	0.96[CEU][hapmap];0.98[GIH][hapmap];0.98[TSI][hapmap];0.93[EUR][1000 genomes]
rs2009972	0.89[CEU][hapmap];0.82[CHB][hapmap];0.87[CHD][hapmap];0.83[JPT][hapmap];0.91[TSI][hapmap];0.81[ASN][1000 genomes]
rs2010026	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs2011995	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs2014638	0.89[GIH][hapmap];0.92[MEX][hapmap];0.91[TSI][hapmap];0.80[AMR][1000 genomes]
rs2034856	0.88[ASW][hapmap];1.00[CEU][hapmap];0.81[CHB][hapmap];0.80[CHD][hapmap];1.00[GIH][hapmap];0.91[LWK][hapmap];0.97[MKK][hapmap];0.98[TSI][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs2034857	0.89[ASW][hapmap];0.86[CHB][hapmap];0.95[CHD][hapmap];0.90[GIH][hapmap];0.88[LWK][hapmap];0.85[MKK][hapmap];0.89[TSI][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2034858	0.89[ASW][hapmap];0.86[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.91[LWK][hapmap];0.96[MEX][hapmap];0.87[MKK][hapmap];0.91[TSI][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2052705	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs2052706	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs2052708	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2052709	1.00[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2077743	0.89[ASW][hapmap];0.82[GIH][hapmap];0.86[LWK][hapmap];0.91[MEX][hapmap];0.85[MKK][hapmap];0.85[TSI][hapmap];0.91[AMR][1000 genomes]
rs2114191	1.00[CEU][hapmap];0.95[GIH][hapmap];0.98[TSI][hapmap];0.86[EUR][1000 genomes]
rs2241503	0.96[CEU][hapmap];0.91[CHB][hapmap];0.84[CHD][hapmap];0.93[GIH][hapmap];0.82[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2252606	1.00[CEU][hapmap];0.90[CHB][hapmap];0.80[JPT][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2252831	1.00[CEU][hapmap];0.98[GIH][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs2253116	1.00[CEU][hapmap];0.91[CHB][hapmap];0.87[CHD][hapmap];0.95[GIH][hapmap];0.82[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2258248	0.85[CEU][hapmap]
rs2264339	0.90[CHB][hapmap];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2303443	0.91[GIH][hapmap];0.89[TSI][hapmap]
rs2414116	0.81[GIH][hapmap];0.86[LWK][hapmap]
rs2414117	0.91[AMR][1000 genomes]
rs2414119	0.96[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2414122	0.84[CEU][hapmap];0.93[GIH][hapmap];0.87[EUR][1000 genomes]
rs2433217	1.00[CEU][hapmap];0.97[GIH][hapmap];0.95[TSI][hapmap];0.90[EUR][1000 genomes]
rs2433221	0.96[CEU][hapmap];0.93[GIH][hapmap];0.98[TSI][hapmap];0.86[EUR][1000 genomes]
rs2433222	0.89[EUR][1000 genomes]
rs2436655	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs2436656	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs2436657	0.89[EUR][1000 genomes]
rs2436658	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2436660	1.00[CEU][hapmap];0.98[GIH][hapmap];0.98[TSI][hapmap];0.88[EUR][1000 genomes]
rs2436661	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2436662	0.94[EUR][1000 genomes]
rs2441780	1.00[CEU][hapmap];1.00[GIH][hapmap];0.98[TSI][hapmap];0.89[EUR][1000 genomes]
rs2448946	1.00[CEU][hapmap];0.97[GIH][hapmap];0.95[TSI][hapmap];0.90[EUR][1000 genomes]
rs2448947	0.89[EUR][1000 genomes]
rs2448948	0.88[EUR][1000 genomes]
rs2448949	0.84[EUR][1000 genomes]
rs2448950	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs2448951	0.88[EUR][1000 genomes]
rs2448953	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs2470600	0.88[EUR][1000 genomes]
rs2470601	0.89[EUR][1000 genomes]
rs2470602	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2470603	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2470604	0.81[ASN][1000 genomes]
rs2470605	0.82[ASN][1000 genomes]
rs2470607	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2470608	0.88[EUR][1000 genomes]
rs2470610	0.89[EUR][1000 genomes]
rs2470611	0.88[EUR][1000 genomes]
rs2470612	1.00[CEU][hapmap];0.95[TSI][hapmap];0.87[EUR][1000 genomes]
rs2470616	0.86[EUR][1000 genomes]
rs2470617	0.96[CEU][hapmap];0.88[GIH][hapmap];0.88[TSI][hapmap]
rs2470618	0.90[EUR][1000 genomes]
rs2470619	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2554305	0.90[CHB][hapmap];0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2554306	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2554307	0.90[CHB][hapmap];0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2554308	0.91[CHB][hapmap];0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2554314	1.00[CEU][hapmap];0.81[CHB][hapmap];0.95[EUR][1000 genomes]
rs2554315	0.82[CHB][hapmap];0.93[CHD][hapmap];0.84[ASN][1000 genomes]
rs2554322	0.87[EUR][1000 genomes]
rs2554327	1.00[CEU][hapmap];0.98[GIH][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs2554328	0.94[EUR][1000 genomes]
rs2554334	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2554336	0.91[CHB][hapmap];0.87[CHD][hapmap];0.91[GIH][hapmap];0.96[MEX][hapmap];0.89[TSI][hapmap];0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2554342	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2554345	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2554348	0.92[CEU][hapmap]
rs2554349	1.00[CEU][hapmap];0.86[CHB][hapmap];0.87[CHD][hapmap];0.97[GIH][hapmap];0.82[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2554350	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2554353	0.94[EUR][1000 genomes]
rs2570224	0.91[GIH][hapmap];0.91[TSI][hapmap]
rs2570228	0.91[CHB][hapmap];0.87[CHD][hapmap];0.91[GIH][hapmap];0.96[MEX][hapmap];0.91[TSI][hapmap];0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2570231	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2570233	0.91[CHB][hapmap];0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2570235	0.80[AMR][1000 genomes]
rs2570237	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2570238	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2570239	1.00[CEU][hapmap];0.98[GIH][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs2570240	0.91[EUR][1000 genomes]
rs2570241	1.00[CEU][hapmap];0.98[GIH][hapmap];0.88[MEX][hapmap];0.98[TSI][hapmap];0.91[EUR][1000 genomes]
rs2570248	0.94[EUR][1000 genomes]
rs2570258	0.91[CHB][hapmap];0.87[CHD][hapmap];0.91[GIH][hapmap];0.96[MEX][hapmap];0.89[TSI][hapmap];0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2570260	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2570263	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2570268	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2570269	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2570271	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2570275	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2593168	0.89[EUR][1000 genomes]
rs2593170	1.00[CEU][hapmap];0.95[GIH][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs2593173	1.00[CEU][hapmap];0.91[CHB][hapmap];0.87[CHD][hapmap];0.98[GIH][hapmap];0.82[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2593177	0.87[EUR][1000 genomes]
rs2593179	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2593181	0.85[CEU][hapmap]
rs2593182	0.89[EUR][1000 genomes]
rs2593183	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2593185	0.83[CEU][hapmap];0.85[CHB][hapmap];0.85[JPT][hapmap];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2593187	1.00[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2593188	1.00[CEU][hapmap];0.93[GIH][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs2593191	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2593198	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2593199	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs2593202	1.00[CEU][hapmap];0.91[CHB][hapmap];0.81[JPT][hapmap];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2593204	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2623243	0.87[EUR][1000 genomes]
rs2623244	0.87[EUR][1000 genomes]
rs2623254	0.90[CHB][hapmap];0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2623255	1.00[CEU][hapmap];0.93[GIH][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes]
rs2623262	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2623266	0.89[EUR][1000 genomes]
rs2623271	1.00[CEU][hapmap];0.98[GIH][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs2623279	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2623281	1.00[CEU][hapmap];0.90[CHB][hapmap];0.82[JPT][hapmap];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2623282	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs2623283	1.00[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2623284	0.89[EUR][1000 genomes]
rs2623285	0.89[EUR][1000 genomes]
rs2623286	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2623288	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2623289	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28699115	0.83[EUR][1000 genomes]
rs2912186	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs2912187	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs2912188	0.87[EUR][1000 genomes]
rs2912189	1.00[CEU][hapmap];1.00[GIH][hapmap];0.95[TSI][hapmap];0.90[EUR][1000 genomes]
rs2916169	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs2916170	0.89[EUR][1000 genomes]
rs2916171	0.89[EUR][1000 genomes]
rs2916172	1.00[CEU][hapmap];1.00[GIH][hapmap];0.98[TSI][hapmap];0.89[EUR][1000 genomes]
rs2916175	0.90[EUR][1000 genomes]
rs2916176	1.00[CEU][hapmap];1.00[GIH][hapmap];0.98[TSI][hapmap];0.90[EUR][1000 genomes]
rs2916177	1.00[CEU][hapmap];0.98[GIH][hapmap];0.98[TSI][hapmap];0.88[EUR][1000 genomes]
rs2921951	0.89[EUR][1000 genomes]
rs2921953	0.88[EUR][1000 genomes]
rs2929422	0.87[EUR][1000 genomes]
rs2929423	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs2929424	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs2929425	1.00[CEU][hapmap];1.00[GIH][hapmap];0.98[TSI][hapmap];0.89[EUR][1000 genomes]
rs2929426	1.00[CEU][hapmap];0.98[GIH][hapmap];0.98[TSI][hapmap];0.89[EUR][1000 genomes]
rs2929428	0.88[EUR][1000 genomes]
rs2959285	1.00[CEU][hapmap];1.00[GIH][hapmap];0.98[TSI][hapmap];0.89[EUR][1000 genomes]
rs2959289	0.85[EUR][1000 genomes]
rs2959291	0.87[EUR][1000 genomes]
rs2959292	0.87[EUR][1000 genomes]
rs2959293	0.96[CEU][hapmap];0.95[GIH][hapmap];0.98[TSI][hapmap];0.87[EUR][1000 genomes]
rs2959296	0.84[CEU][hapmap]
rs2959298	1.00[CEU][hapmap];0.95[GIH][hapmap];0.98[TSI][hapmap];0.89[EUR][1000 genomes]
rs2959299	1.00[CEU][hapmap];0.98[GIH][hapmap];0.98[TSI][hapmap];0.88[EUR][1000 genomes]
rs2959300	0.88[EUR][1000 genomes]
rs2959302	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2959304	0.84[EUR][1000 genomes]
rs2959305	0.90[EUR][1000 genomes]
rs2959306	0.88[EUR][1000 genomes]
rs2959307	0.89[EUR][1000 genomes]
rs3088312	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34098740	0.80[EUR][1000 genomes]
rs34504520	0.96[EUR][1000 genomes]
rs35270232	0.95[EUR][1000 genomes]
rs35391204	0.83[EUR][1000 genomes]
rs35823585	0.96[EUR][1000 genomes]
rs36087956	0.89[EUR][1000 genomes]
rs3751596	0.86[CHB][hapmap];0.93[CHD][hapmap];0.91[GIH][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.96[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs3794530	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs3794532	1.00[CEU][hapmap];0.81[CHB][hapmap];0.94[EUR][1000 genomes]
rs3794534	0.86[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs3794535	0.94[ASW][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.93[LWK][hapmap];0.83[MEX][hapmap];0.86[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs3794536	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs3898905	0.83[EUR][1000 genomes]
rs4238383	0.89[ASW][hapmap];0.86[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.89[TSI][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs4365237	0.90[EUR][1000 genomes]
rs4502160	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs4534783	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4622456	0.91[AMR][1000 genomes]
rs4774602	0.84[ASW][hapmap];0.86[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];0.91[TSI][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4775978	0.85[CHB][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4775982	0.90[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4775983	0.91[CHB][hapmap];0.93[CHD][hapmap];0.91[GIH][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.96[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs55843525	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs56148956	0.96[EUR][1000 genomes]
rs56185947	0.95[EUR][1000 genomes]
rs58758283	0.85[ASN][1000 genomes]
rs60329909	0.86[ASN][1000 genomes]
rs62015190	0.84[EUR][1000 genomes]
rs62016192	0.90[EUR][1000 genomes]
rs6493518	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs6493519	0.86[CHB][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6493520	1.00[CEU][hapmap];0.81[CHB][hapmap];0.80[CHD][hapmap];1.00[GIH][hapmap];0.88[MKK][hapmap];0.98[TSI][hapmap];0.96[EUR][1000 genomes]
rs6493521	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs6493522	0.95[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6493523	0.91[CHB][hapmap];0.93[CHD][hapmap];0.91[GIH][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.91[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6493525	1.00[CEU][hapmap];1.00[GIH][hapmap];0.98[TSI][hapmap];0.93[EUR][1000 genomes]
rs6493526	1.00[CEU][hapmap];0.98[GIH][hapmap];0.98[TSI][hapmap];0.92[EUR][1000 genomes]
rs689884	0.86[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.87[TSI][hapmap];0.91[AMR][1000 genomes]
rs689922	0.81[ASN][1000 genomes]
rs690287	0.82[ASN][1000 genomes]
rs690638	0.82[CHB][hapmap];0.95[CHD][hapmap];0.82[ASN][1000 genomes]
rs7162176	0.88[EUR][1000 genomes]
rs7162554	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7162925	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs7163176	0.91[AMR][1000 genomes]
rs7163541	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs7164961	0.96[EUR][1000 genomes]
rs7165283	0.86[CHB][hapmap]
rs7165585	0.89[ASW][hapmap];0.86[LWK][hapmap];0.91[MEX][hapmap];0.83[MKK][hapmap];0.85[TSI][hapmap];0.91[AMR][1000 genomes]
rs7166110	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs7166962	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7168659	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7170091	1.00[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap];0.97[EUR][1000 genomes]
rs7170910	0.91[EUR][1000 genomes]
rs7171459	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7171516	0.97[EUR][1000 genomes]
rs7171796	1.00[CEU][hapmap];0.81[CHB][hapmap];0.95[EUR][1000 genomes]
rs7173375	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs7174497	1.00[CEU][hapmap];0.81[CHB][hapmap];0.80[CHD][hapmap];1.00[GIH][hapmap];0.88[MKK][hapmap];0.95[TSI][hapmap];0.90[EUR][1000 genomes]
rs7174808	1.00[CEU][hapmap];0.81[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];0.87[MKK][hapmap];0.95[TSI][hapmap];0.90[EUR][1000 genomes]
rs7174941	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7175017	0.89[EUR][1000 genomes]
rs7176421	0.82[ASN][1000 genomes]
rs7178166	0.90[EUR][1000 genomes]
rs7178561	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs7178776	1.00[CEU][hapmap];0.81[CHB][hapmap];0.95[EUR][1000 genomes]
rs7178940	0.92[EUR][1000 genomes]
rs7179599	1.00[CEU][hapmap];0.81[CHB][hapmap];0.88[YRI][hapmap];0.96[EUR][1000 genomes]
rs7181540	1.00[CEU][hapmap];0.81[CHB][hapmap];0.88[EUR][1000 genomes]
rs7181553	0.89[ASW][hapmap];0.86[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];0.89[LWK][hapmap];0.96[MEX][hapmap];0.87[MKK][hapmap];0.85[TSI][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs726158	1.00[CEU][hapmap];0.81[CHB][hapmap];0.94[EUR][1000 genomes]
rs72732914	0.90[EUR][1000 genomes]
rs72732952	0.80[ASN][1000 genomes]
rs8024081	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs8024088	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs8024585	0.94[EUR][1000 genomes]
rs8024589	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs8025069	0.90[EUR][1000 genomes]
rs8026521	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8027244	0.84[AMR][1000 genomes]
rs8027721	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8028258	0.83[ASW][hapmap];0.84[GIH][hapmap];0.86[LWK][hapmap];0.91[MEX][hapmap];0.85[MKK][hapmap];0.85[TSI][hapmap];0.91[AMR][1000 genomes]
rs8028486	0.95[EUR][1000 genomes]
rs8028890	0.86[CHB][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs8028922	1.00[CEU][hapmap];0.81[CHB][hapmap];0.80[CHD][hapmap];1.00[GIH][hapmap];0.98[TSI][hapmap];0.82[YRI][hapmap];0.96[EUR][1000 genomes]
rs8029036	0.84[EUR][1000 genomes]
rs8033433	0.92[EUR][1000 genomes]
rs8035126	0.92[EUR][1000 genomes]
rs8035173	0.92[CEU][hapmap];0.93[GIH][hapmap]
rs8038344	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs8040975	0.90[EUR][1000 genomes]
rs8040986	0.83[EUR][1000 genomes]
rs8040991	0.94[EUR][1000 genomes]
rs8041268	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs8041866	0.84[EUR][1000 genomes]
rs919059	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9635308	0.82[CHB][hapmap];0.81[ASN][1000 genomes]
rs990665	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9944235	1.00[CEU][hapmap];0.81[CHB][hapmap];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569409	chr15:52028914-52268144	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	esv3361968	chr15:52087428-52107237	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	n/a

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs12905283	SCG3	cis	Frontal Cortex	GTEx
rs12905283	TMOD2	cis	cerebellum	SCAN

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:52052200-52101800	Weak transcription	Colonic Mucosa	Colon
2	chr15:52052600-52106600	Weak transcription	HSMM	muscle
3	chr15:52053400-52090600	Weak transcription	Pancreas	Pancrea
4	chr15:52060200-52103400	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr15:52060600-52091000	Weak transcription	Right Ventricle	heart
6	chr15:52060800-52101200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr15:52060800-52102600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr15:52060800-52105400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr15:52061600-52112000	Weak transcription	NHLF	lung
10	chr15:52061800-52098600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr15:52064400-52090400	Weak transcription	Left Ventricle	heart
12	chr15:52065600-52090600	Weak transcription	Spleen	Spleen
13	chr15:52065800-52091000	Weak transcription	Esophagus	oesophagus
14	chr15:52067200-52090600	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr15:52067600-52090600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr15:52069200-52091000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr15:52074000-52090600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr15:52074000-52100000	Weak transcription	NHDF-Ad	bronchial
19	chr15:52074800-52102800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr15:52075000-52090600	Weak transcription	Dnd41	blood
21	chr15:52076400-52098400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr15:52076600-52090400	Weak transcription	Primary B cells from cord blood	blood
23	chr15:52076600-52090400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr15:52076600-52090400	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr15:52076600-52090400	Weak transcription	Stomach Smooth Muscle	stomach
26	chr15:52076600-52090600	Weak transcription	Primary T cells fromperipheralblood	blood
27	chr15:52076600-52090600	Weak transcription	Fetal Muscle Trunk	muscle
28	chr15:52076800-52090800	Weak transcription	Primary neutrophils fromperipheralblood	blood
29	chr15:52076800-52090800	Weak transcription	Primary T helper cells PMA-I stimulated	--
30	chr15:52076800-52104400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr15:52077000-52090400	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr15:52077200-52098600	Weak transcription	Fetal Brain Male	brain
33	chr15:52079000-52098400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr15:52079200-52089600	Weak transcription	Primary T helper cells fromperipheralblood	blood
35	chr15:52079200-52090600	Weak transcription	Fetal Thymus	thymus
36	chr15:52079200-52098600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr15:52079400-52090600	Weak transcription	Rectal Smooth Muscle	rectum
38	chr15:52079600-52090400	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr15:52080000-52090600	Weak transcription	Brain Anterior Caudate	brain
40	chr15:52080000-52090600	Weak transcription	Ovary	ovary
41	chr15:52080000-52099000	Weak transcription	Colon Smooth Muscle	Colon
42	chr15:52080200-52090400	Weak transcription	Primary monocytes fromperipheralblood	blood
43	chr15:52080200-52090400	Weak transcription	Fetal Muscle Leg	muscle
44	chr15:52080200-52090600	Weak transcription	Fetal Stomach	stomach
45	chr15:52080400-52090400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr15:52080400-52090400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr15:52080400-52090400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr15:52080400-52090400	Weak transcription	Brain Angular Gyrus	brain
49	chr15:52080400-52090400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr15:52080400-52090600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

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