Variant report

Variant	rs12905804
Chromosome Location	chr15:77147322-77147323
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs3110383	0.97[AFR][1000 genomes]
rs4886833	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv542439	chr15:76762161-77196336	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	esv3440794	chr15:76764595-77571114	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	esv2830013	chr15:76863023-77176158	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1046137	chr15:76892097-77196336	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv542442	chr15:76892097-77196336	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	esv3367577	chr15:77015618-77442634	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77111600-77174200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr15:77112200-77196000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr15:77120400-77158400	Weak transcription	Colon Smooth Muscle	Colon
4	chr15:77123200-77153200	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr15:77124400-77149600	Weak transcription	HepG2	liver
6	chr15:77125800-77175400	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr15:77130600-77147400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr15:77131200-77155600	Weak transcription	Left Ventricle	heart
9	chr15:77131400-77148000	Weak transcription	Placenta	Placenta
10	chr15:77133200-77147600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr15:77133200-77196800	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr15:77139800-77155600	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr15:77139800-77158400	Weak transcription	Rectal Smooth Muscle	rectum
14	chr15:77140000-77153600	Weak transcription	Brain Cingulate Gyrus	brain
15	chr15:77140800-77195800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr15:77141400-77171600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr15:77141800-77147400	Weak transcription	Fetal Kidney	kidney
18	chr15:77141800-77168000	Weak transcription	Spleen	Spleen
19	chr15:77142000-77148200	Weak transcription	Gastric	stomach
20	chr15:77142000-77158000	Weak transcription	Brain Angular Gyrus	brain
21	chr15:77142000-77167200	Weak transcription	Esophagus	oesophagus
22	chr15:77142000-77167800	Weak transcription	Pancreas	Pancrea
23	chr15:77142000-77175800	Weak transcription	Fetal Brain Male	brain
24	chr15:77142000-77195800	Weak transcription	Right Ventricle	heart
25	chr15:77142200-77167600	Weak transcription	Lung	lung
26	chr15:77142800-77147600	Weak transcription	Stomach Smooth Muscle	stomach
27	chr15:77142800-77166400	Weak transcription	Thymus	Thymus
28	chr15:77143200-77149800	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr15:77143400-77148600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr15:77144400-77148000	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr15:77144400-77149200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr15:77144600-77149600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr15:77144800-77147400	Weak transcription	HSMM	muscle
34	chr15:77144800-77179000	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr15:77145000-77158000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr15:77145200-77148400	Strong transcription	Duodenum Smooth Muscle	Duodenum
37	chr15:77145200-77148600	Strong transcription	Primary B cells from peripheral blood	blood
38	chr15:77145200-77158200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr15:77145200-77158400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr15:77145800-77147400	Weak transcription	Fetal Lung	lung
41	chr15:77146000-77148800	Strong transcription	Monocytes-CD14+_RO01746	blood
42	chr15:77146000-77153800	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chr15:77146000-77155600	Weak transcription	Psoas Muscle	Psoas
44	chr15:77146200-77147400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr15:77146200-77147400	Weak transcription	Adipose Nuclei	Adipose
46	chr15:77146200-77148800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr15:77146200-77156000	Weak transcription	Ovary	ovary
48	chr15:77146200-77158000	Weak transcription	Brain Hippocampus Middle	brain
49	chr15:77146200-77175400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr15:77146400-77147600	Weak transcription	Primary monocytes fromperipheralblood	blood

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