Variant report

Variant	rs12909393
Chromosome Location	chr15:76132498-76132499
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:76108933..76110911-chr15:76131378..76133138,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000252372	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17426432	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55985217	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57090077	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8182013	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8182037	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531903	chr15:75889302-76342128	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
2	nsv1044733	chr15:76120924-76228880	Flanking Active TSS Strong transcription Active TSS Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76125200-76134800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr15:76126200-76135000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:76129400-76135000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr15:76129600-76133000	Weak transcription	A549	lung
5	chr15:76129600-76133200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr15:76129600-76134800	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr15:76129600-76135000	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr15:76129600-76135000	Weak transcription	Fetal Heart	heart
9	chr15:76129600-76135200	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr15:76129800-76133000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr15:76129800-76133000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr15:76129800-76133000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr15:76129800-76133000	Weak transcription	Hela-S3	cervix
14	chr15:76129800-76133000	Weak transcription	HUVEC	blood vessel
15	chr15:76129800-76133000	Weak transcription	K562	blood
16	chr15:76129800-76133000	Weak transcription	NHDF-Ad	bronchial
17	chr15:76129800-76134800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr15:76129800-76134800	Weak transcription	Osteobl	bone
19	chr15:76129800-76135000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr15:76129800-76135000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr15:76129800-76135000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr15:76129800-76135000	Weak transcription	Duodenum Mucosa	Duodenum
23	chr15:76130000-76132800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr15:76130000-76133000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr15:76130000-76133000	Weak transcription	NH-A	brain
26	chr15:76130000-76134800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr15:76130000-76134800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr15:76130000-76134800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr15:76130000-76134800	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr15:76130000-76135000	Weak transcription	Primary hematopoietic stem cells	blood
31	chr15:76130000-76135000	Weak transcription	Primary T helper cells PMA-I stimulated	--
32	chr15:76130000-76135000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr15:76130000-76135000	Weak transcription	NHLF	lung
34	chr15:76130400-76135000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr15:76130600-76133000	Weak transcription	Monocytes-CD14+_RO01746	blood
36	chr15:76130600-76134800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr15:76130600-76135000	Weak transcription	HSMM	muscle
38	chr15:76131600-76134800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr15:76131600-76134800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr15:76131800-76134600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr15:76131800-76135000	Weak transcription	NHEK	skin
42	chr15:76132000-76135000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr15:76132000-76135000	Weak transcription	HMEC	breast

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