Variant report

Variant	rs12909865
Chromosome Location	chr15:58291971-58291972
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:58283520..58285614-chr15:58290103..58292837,2	K562	blood:

Extended variants
information (count: 138 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:133)

rs_ID	r²[population]
rs10518961	0.94[ASN][1000 genomes]
rs1061278	0.86[EUR][1000 genomes]
rs1063666	0.83[EUR][1000 genomes]
rs10851632	0.82[EUR][1000 genomes]
rs11071363	0.94[ASN][1000 genomes]
rs11071364	0.94[ASN][1000 genomes]
rs11071367	0.88[ASN][1000 genomes]
rs11629553	0.85[ASN][1000 genomes]
rs11629583	0.91[ASN][1000 genomes]
rs11631127	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11636979	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11857465	0.97[ASN][1000 genomes]
rs12148281	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12324197	0.94[ASN][1000 genomes]
rs12594082	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12595180	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12595410	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12898976	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12903724	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12905608	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12907125	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12909423	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12909979	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12911450	0.96[ASN][1000 genomes]
rs12912093	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12914388	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12914414	0.96[ASN][1000 genomes]
rs12914455	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12914603	0.93[ASN][1000 genomes]
rs12915508	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12915821	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12915989	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12917536	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1372369	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1441815	0.94[ASN][1000 genomes]
rs1441819	0.83[EUR][1000 genomes]
rs1441829	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17820966	0.91[ASN][1000 genomes]
rs17820990	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1812889	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1822205	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1837851	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1899355	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1994926	0.94[ASN][1000 genomes]
rs1994927	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2044071	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2067062	0.95[ASN][1000 genomes]
rs2119859	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2197092	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2414527	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2414529	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2414530	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2642630	0.98[ASN][1000 genomes]
rs2642632	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2704196	0.96[ASN][1000 genomes]
rs2704197	0.94[ASN][1000 genomes]
rs2704218	0.89[ASN][1000 genomes]
rs2704225	0.91[ASN][1000 genomes]
rs2899611	0.98[ASN][1000 genomes]
rs2899612	0.94[ASN][1000 genomes]
rs2899613	0.93[ASN][1000 genomes]
rs3204690	0.83[EUR][1000 genomes]
rs33960206	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34226780	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34556514	0.94[ASN][1000 genomes]
rs34676542	0.96[ASN][1000 genomes]
rs34958088	0.94[ASN][1000 genomes]
rs3742959	0.85[EUR][1000 genomes]
rs3742960	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3742961	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3784256	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3784257	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3784259	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3784264	0.88[ASN][1000 genomes]
rs3809535	0.87[ASN][1000 genomes]
rs4144005	0.94[ASN][1000 genomes]
rs4238327	0.94[ASN][1000 genomes]
rs4553566	0.94[ASN][1000 genomes]
rs4646549	0.87[ASN][1000 genomes]
rs4646554	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4646555	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4646557	0.89[ASN][1000 genomes]
rs4646559	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4646560	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4646564	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4646566	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4646570	0.94[ASN][1000 genomes]
rs4646579	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4646580	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4646581	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4646582	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4646584	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4646588	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4646589	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4646590	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4646592	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4646594	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4646595	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4646596	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4646597	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4646598	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4646600	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4646602	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4646603	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4646605	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4646606	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4646607	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4646609	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4646623	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4646625	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4646626	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4646635	0.89[EUR][1000 genomes]
rs4646642	0.83[EUR][1000 genomes]
rs4646645	0.82[EUR][1000 genomes]
rs57975858	0.94[ASN][1000 genomes]
rs6493977	0.98[ASN][1000 genomes]
rs6493978	0.98[ASN][1000 genomes]
rs6493979	0.94[ASN][1000 genomes]
rs6493980	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6493981	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs66971399	0.98[ASN][1000 genomes]
rs7171261	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7171714	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7178598	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7180059	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8023769	0.94[ASN][1000 genomes]
rs8026952	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8027188	0.94[ASN][1000 genomes]
rs8027964	0.94[ASN][1000 genomes]
rs8032572	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8041644	0.90[ASN][1000 genomes]
rs9635346	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9635350	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038667	chr15:57933076-58481870	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv542400	chr15:57933076-58481870	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv833023	chr15:58161839-58340174	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv569593	chr15:58201698-58308650	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv904261	chr15:58258424-58347260	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58285400-58301400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr15:58289000-58292400	Weak transcription	K562	blood
3	chr15:58289800-58299000	Weak transcription	Fetal Lung	lung
4	chr15:58291600-58292600	ZNF genes & repeats	Fetal Kidney	kidney

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