Variant report

Variant	rs12910376
Chromosome Location	chr15:61127206-61127207
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11071561	0.89[CHB][hapmap];0.88[JPT][hapmap]
rs341401	0.89[CEU][hapmap];0.84[CHB][hapmap];0.82[EUR][1000 genomes]
rs3959689	0.94[CHB][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs4775301	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8023252	0.89[CHB][hapmap];0.88[JPT][hapmap];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs8024133	0.90[CHB][hapmap];0.88[JPT][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049839	chr15:61095001-61275125	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:61112400-61128200	Weak transcription	Primary T cells from cord blood	blood
2	chr15:61115800-61130000	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr15:61115800-61131600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr15:61115800-61133600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr15:61116000-61130200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr15:61120000-61130000	Weak transcription	Left Ventricle	heart
7	chr15:61123200-61142000	Weak transcription	Fetal Stomach	stomach
8	chr15:61123400-61127600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr15:61123400-61128000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr15:61123600-61127800	Weak transcription	NHDF-Ad	bronchial
11	chr15:61123600-61128200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr15:61123600-61145200	Weak transcription	Right Ventricle	heart
13	chr15:61124000-61128000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr15:61124800-61127800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr15:61126000-61127400	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr15:61126000-61127400	Enhancers	H1 Cell Line	embryonic stem cell
17	chr15:61126000-61130600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
18	chr15:61126200-61127400	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr15:61126200-61127400	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr15:61126200-61127800	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr15:61126400-61127400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr15:61126400-61127600	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr15:61126400-61128000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr15:61126600-61127400	Enhancers	H9 Cell Line	embryonic stem cell
25	chr15:61126800-61141600	Weak transcription	Stomach Smooth Muscle	stomach
26	chr15:61127000-61131800	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr15:61127000-61132400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr15:61127200-61127400	Enhancers	Psoas Muscle	Psoas
29	chr15:61127200-61128200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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