Variant report

Variant	rs12913472
Chromosome Location	chr15:53204778-53204779
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11070921	0.88[EUR][1000 genomes]
rs11070935	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12900070	0.84[EUR][1000 genomes]
rs12912619	0.90[EUR][1000 genomes]
rs1899734	0.80[EUR][1000 genomes]
rs1899739	0.84[EUR][1000 genomes]
rs2120447	0.85[EUR][1000 genomes]
rs2165989	0.84[EUR][1000 genomes]
rs2414185	0.84[EUR][1000 genomes]
rs6493597	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6493598	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6493599	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8030817	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8032241	0.81[EUR][1000 genomes]
rs8032248	0.81[EUR][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:53204200-53205000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:53204200-53205200	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr15:53204200-53207400	Weak transcription	Pancreas	Pancrea
4	chr15:53204400-53205000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr15:53204400-53205000	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr15:53204400-53205200	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr15:53204600-53205000	Enhancers	H1 Cell Line	embryonic stem cell
8	chr15:53204600-53205000	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr15:53204600-53205000	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr15:53204600-53205000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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