Variant report

Variant	rs12916483
Chromosome Location	chr15:78832397-78832398
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:78832389-78833221	U87	brain:	n/a	n/a
2	TAF1	chr15:78832373-78833230	ECC-1	luminal epithelium:	n/a	n/a
3	E2F4	chr15:78832329-78833108	MCF10A-Er-Src	breast:	n/a	chr15:78832739-78832748 chr15:78832769-78832778 chr15:78833049-78833058
4	POLR2A	chr15:78832370-78833100	K562	blood:	n/a	n/a
5	POLR2A	chr15:78832300-78833450	HUVEC	blood vessel:	n/a	n/a
6	POLR2A	chr15:78832388-78833212	HCT-116	colon:	n/a	n/a
7	POLR2A	chr15:78832021-78833457	PFSK-1	brain:	n/a	n/a
8	MXI1	chr15:78832315-78833620	GM12878	blood:	n/a	n/a
9	POLR2A	chr15:78832284-78834051	K562	blood:	n/a	n/a
10	ELF1	chr15:78832134-78833114	MCF-7	breast:	n/a	chr15:78832717-78832728 chr15:78832718-78832727
11	MAX	chr15:78832267-78833432	NB4	blood:	n/a	chr15:78833105-78833115 chr15:78833118-78833128
12	ZNF263	chr15:78832328-78833042	HEK293-T-REx	kidney:	n/a	n/a
13	POLR2A	chr15:78830840-78834174	GM12878	blood:	n/a	n/a
14	MYC	chr15:78832270-78833718	K562	blood:	n/a	chr15:78833105-78833115 chr15:78833118-78833128
15	TAF1	chr15:78832251-78833566	A549	lung:	n/a	n/a
16	POLR2A	chr15:78832174-78833462	GM12892	blood:	n/a	n/a
17	TBP	chr15:78832282-78833336	K562	blood:	n/a	n/a
18	PML	chr15:78832394-78833226	MCF-7	breast:	n/a	n/a
19	ZBTB7A	chr15:78832370-78833290	ECC-1	luminal epithelium:	n/a	n/a
20	MAFF	chr15:78832196-78832623	K562	blood:	n/a	chr15:78832314-78832332
21	YY1	chr15:78832307-78833162	K562	blood:	n/a	chr15:78833047-78833061 chr15:78832779-78832791 chr15:78833050-78833061
22	RFX5	chr15:78832303-78834452	Hela-S3	cervix:	n/a	chr15:78833791-78833799
23	REST	chr15:78832247-78833265	HL-60	blood:	n/a	chr15:78832656-78832666 chr15:78833115-78833128
24	POLR2A	chr15:78832230-78834004	GM18951	blood:	n/a	n/a
25	POLR2A	chr15:78832380-78833361	ECC-1	luminal epithelium:	n/a	n/a
26	MAFF	chr15:78832187-78833020	HepG2	liver:	n/a	chr15:78832314-78832332
27	TBP	chr15:78832385-78833013	Hela-S3	cervix:	n/a	n/a
28	POLR2A	chr15:78832316-78834361	K562	blood:	n/a	n/a
29	POLR2A	chr15:78832367-78833147	Gliobla	brain:	n/a	n/a
30	ELF1	chr15:78832332-78833324	SK-N-SH	brain:	n/a	chr15:78833226-78833238 chr15:78832717-78832728 chr15:78832718-78832727
31	POLR2A	chr15:78831151-78834112	GM12878	blood:	n/a	n/a
32	POLR2A	chr15:78832299-78833234	Hela-S3	cervix:	n/a	n/a
33	MAX	chr15:78832297-78833258	ECC-1	luminal epithelium:	n/a	chr15:78833105-78833115 chr15:78833118-78833128
34	REST	chr15:78832254-78833271	A549	lung:	n/a	chr15:78832656-78832666 chr15:78833115-78833128
35	MYC	chr15:78832281-78833407	NB4	blood:	n/a	chr15:78833105-78833115 chr15:78833118-78833128
36	CEBPB	chr15:78832334-78834434	Hela-S3	cervix:	n/a	chr15:78833564-78833576 chr15:78833563-78833576 chr15:78833592-78833604
37	TCF12	chr15:78832185-78833782	A549	lung:	n/a	n/a
38	MYC	chr15:78832273-78833263	K562	blood:	n/a	chr15:78833105-78833115 chr15:78833118-78833128
39	POLR2A	chr15:78832288-78833405	HUVEC	blood vessel:	n/a	n/a
40	ELK1	chr15:78832372-78833315	GM12878	blood:	n/a	n/a
41	POLR2A	chr15:78832166-78833767	GM19193	blood:	n/a	n/a
42	HMGN3	chr15:78832389-78833235	K562	blood:	n/a	n/a
43	ETS1	chr15:78832320-78833312	A549	lung:	n/a	chr15:78832709-78832726 chr15:78832740-78832751
44	MYC	chr15:78832254-78833175	MCF10A-Er-Src	breast:	n/a	chr15:78833105-78833115 chr15:78833118-78833128
45	POLR2A	chr15:78830693-78835554	GM12891	blood:	n/a	n/a
46	TAF1	chr15:78832388-78833213	H1-hESC	embryonic stem cell:	n/a	n/a
47	POLR2A	chr15:78832301-78833247	HUVEC	blood vessel:	n/a	n/a
48	MAX	chr15:78832273-78833407	HepG2	liver:	n/a	chr15:78833105-78833115 chr15:78833118-78833128
49	ELF1	chr15:78832259-78833336	HCT-116	colon:	n/a	chr15:78833226-78833238 chr15:78832717-78832728 chr15:78832718-78832727
50	YY1	chr15:78832289-78833219	SK-N-SH_RA	brain:	n/a	chr15:78833047-78833061 chr15:78832779-78832791 chr15:78833050-78833061

No.	Distal block	Cell Line	Cell type
1	chr15:78831297..78836398-chr15:78856605..78860226,12	MCF-7	breast:
2	chr15:78832364..78832906-chr6:26199079..26199951,2	NB4	blood:
3	chr15:78832310..78833012-chr7:5569150..5569661,2	Hela-S3	cervix:
4	chr10:113943131..113944016-chr15:78832161..78833133,2	NB4	blood:
5	chr15:78797464..78804546-chr15:78829529..78835433,12	MCF-7	breast:
6	chr15:78832192..78833048-chr7:66205633..66206174,2	Hela-S3	cervix:
7	chr15:78798809..78800718-chr15:78830322..78833228,2	K562	blood:
8	chr15:78831312..78834277-chr15:78872379..78875019,2	MCF-7	breast:
9	chr15:78798844..78801827-chr15:78830907..78834394,5	MCF-7	breast:
10	chr15:78803621..78806940-chr15:78831151..78833237,3	K562	blood:
11	chr15:78832270..78832973-chr6:83902520..83903020,2	Hela-S3	cervix:
12	chr15:78832026..78832834-chr22:39928240..39929197,3	Hela-S3	cervix:
13	chr15:78831864..78834406-chr17:59476584..59478636,2	MCF-7	breast:
14	chr15:78798048..78801609-chr15:78828919..78833228,5	K562	blood:
15	chr13:50571059..50571582-chr15:78831795..78832694,2	Hela-S3	cervix:
16	chr1:144533622..144534312-chr15:78831795..78832702,2	Hela-S3	cervix:
17	chr15:78829726..78834442-chr15:78855710..78860360,8	K562	blood:

Variant related genes	Relation type
PSMA4	TF binding region
ENSG00000196866	Chromatin interaction
ENSG00000188266	Chromatin interaction
ENSG00000075624	Chromatin interaction
ENSG00000187051	Chromatin interaction
ENSG00000267131	Chromatin interaction
ENSG00000154710	Chromatin interaction
ENSG00000267280	Chromatin interaction
ENSG00000197846	Chromatin interaction
ENSG00000119927	Chromatin interaction
ENSG00000013375	Chromatin interaction
ENSG00000204977	Chromatin interaction
ENSG00000169684	Chromatin interaction
ENSG00000197409	Chromatin interaction
ENSG00000201699	Chromatin interaction
ENSG00000121068	Chromatin interaction
ENSG00000243335	Chromatin interaction

Extended variants
information (count: 76 )
Associated
traits (count: 18 )

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs11630349	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11632604	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11636131	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11858230	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12591557	0.91[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.94[MKK][hapmap];0.95[TSI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12594391	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12900612	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12900783	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12902493	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.89[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12903129	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12906284	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12906846	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12906951	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12907169	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12907425	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12907966	0.90[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12910100	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12910289	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12910726	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12910969	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12910978	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12912022	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12912673	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12913173	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12914694	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.82[MKK][hapmap];0.95[TSI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12915366	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12915428	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12915652	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12916999	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1504545	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];0.89[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1504546	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1504548	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17407257	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1847530	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1979905	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1979906	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1979907	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1979908	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2292117	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28392948	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28438420	0.93[EUR][1000 genomes]
rs2869055	0.91[EUR][1000 genomes]
rs2869544	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3743077	0.83[TSI][hapmap]
rs3813571	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3813572	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4243083	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4275821	0.87[CEU][hapmap]
rs481134	0.84[CEU][hapmap];0.80[TSI][hapmap]
rs4886571	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4886572	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4887062	0.96[CEU][hapmap];0.86[CHB][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4887063	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4887064	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs5022780	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs555018	0.83[CEU][hapmap]
rs55690619	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56007453	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs588765	0.86[CEU][hapmap]
rs601079	0.84[CEU][hapmap]
rs62008174	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62008193	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62008194	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs621849	0.84[CEU][hapmap];0.81[TSI][hapmap]
rs6495306	0.84[CEU][hapmap];0.81[TSI][hapmap]
rs680244	0.84[CEU][hapmap];0.80[TSI][hapmap]
rs7164030	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7173512	0.87[CEU][hapmap]
rs8025429	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8053	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs880395	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs905740	1.00[CEU][hapmap];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs952215	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];0.89[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs952216	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
2	nsv1038816	chr15:78796434-78881087	Strong transcription Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	48 gene(s)	inside rSNPs	diseases

mRNA abundance (count:18)

SNP	Gene	Cis/trans	Tissue	Source
rs12916483	CHRNA3	cis	Muscle Skeletal	GTEx
rs12916483	CHRNA5	cis	cerebellum	SCAN
rs12916483	IREB2	cis	parietal	SCAN
rs12916483	RP11-650L12.2	cis	Nerve Tibial	GTEx
rs12916483	RP11-650L12.2	cis	Heart Left Ventricle	GTEx
rs12916483	CHRNA5	cis	Esophagus Mucosa	GTEx
rs12916483	CHRNA5	cis	parietal	SCAN
rs12916483	CHRNA5	cis	Heart Left Ventricle	GTEx
rs12916483	RP11-650L12.2	cis	Adipose Subcutaneous	GTEx
rs12916483	CHRNA5	cis	lung	GTEx
rs12916483	CHRNA5	cis	Muscle Skeletal	GTEx
rs12916483	CHRNA5	cis	Adipose Subcutaneous	GTEx
rs12916483	RP11-650L12.2	cis	lung	GTEx
rs12916483	IREB2	cis	cerebellum	SCAN
rs12916483	RP11-650L12.2	cis	Muscle Skeletal	GTEx
rs12916483	PSMA4	cis	cerebellum	SCAN
rs12916483	CHRNA5	cis	Nerve Tibial	GTEx
rs12916483	UBE2Q2	cis	cerebellum	SCAN

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78800800-78832400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr15:78810600-78832400	Weak transcription	Aorta	Aorta
3	chr15:78821200-78832400	Weak transcription	Ovary	ovary
4	chr15:78828800-78832400	Enhancers	Fetal Heart	heart
5	chr15:78832000-78832400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
6	chr15:78832000-78832600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
7	chr15:78832000-78833400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr15:78832000-78833800	Active TSS	Colon Smooth Muscle	Colon
9	chr15:78832000-78834200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr15:78832000-78834200	Active TSS	Duodenum Mucosa	Duodenum
11	chr15:78832000-78834600	Active TSS	Colonic Mucosa	Colon
12	chr15:78832200-78832400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr15:78832200-78832400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
14	chr15:78832200-78832400	Flanking Active TSS	Primary T cells fromperipheralblood	blood
15	chr15:78832200-78832400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
16	chr15:78832200-78832400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
17	chr15:78832200-78832400	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
18	chr15:78832200-78832400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr15:78832200-78832400	Flanking Active TSS	Liver	Liver
20	chr15:78832200-78832400	Flanking Active TSS	Brain Anterior Caudate	brain
21	chr15:78832200-78832400	Flanking Active TSS	Brain Hippocampus Middle	brain
22	chr15:78832200-78832400	Flanking Active TSS	Fetal Muscle Trunk	muscle
23	chr15:78832200-78832400	Flanking Active TSS	Fetal Muscle Leg	muscle
24	chr15:78832200-78832400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
25	chr15:78832200-78832400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
26	chr15:78832200-78832400	Flanking Active TSS	GM12878-XiMat	blood
27	chr15:78832200-78832400	Flanking Active TSS	HepG2	liver
28	chr15:78832200-78832600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr15:78832200-78832600	Flanking Active TSS	Primary B cells from cord blood	blood
30	chr15:78832200-78832600	Flanking Active TSS	Primary B cells from peripheral blood	blood
31	chr15:78832200-78832600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
32	chr15:78832200-78832600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
33	chr15:78832200-78832600	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
34	chr15:78832200-78832600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr15:78832200-78832600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr15:78832200-78832600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr15:78832200-78832600	Flanking Active TSS	Adipose Nuclei	Adipose
38	chr15:78832200-78832600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
39	chr15:78832200-78832600	Flanking Active TSS	Dnd41	blood
40	chr15:78832200-78832600	Flanking Active TSS	NH-A	brain
41	chr15:78832200-78832600	Flanking Active TSS	NHEK	skin
42	chr15:78832200-78832600	Flanking Active TSS	Osteobl	bone
43	chr15:78832200-78832800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr15:78832200-78833200	Active TSS	Primary hematopoietic stem cells short term culture	blood
45	chr15:78832200-78833400	Active TSS	Primary T cells from cord blood	blood
46	chr15:78832200-78833400	Active TSS	Primary hematopoietic stem cells	blood
47	chr15:78832200-78833400	Active TSS	Primary T killer naive cells fromperipheralblood	blood
48	chr15:78832200-78833400	Active TSS	Cortex derived primary cultured neurospheres	brain
49	chr15:78832200-78833400	Active TSS	Brain Cingulate Gyrus	brain
50	chr15:78832200-78833400	Active TSS	Brain Germinal Matrix	brain

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