Variant report

Variant	rs12921900
Chromosome Location	chr16:81102011-81102012
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:81097425..81099177-chr16:81100146..81103114,2	MCF-7	breast:
2	chr16:81100809..81103284-chr16:81103870..81105731,2	MCF-7	breast:
3	chr16:81100280..81102039-chr16:81103026..81105391,2	K562	blood:
4	chr16:81096522..81104265-chr16:81107324..81112531,10	MCF-7	breast:
5	chr16:81097663..81102945-chr16:81104726..81108274,4	K562	blood:
6	chr16:81100539..81102214-chr16:81102627..81104526,2	K562	blood:

Variant related genes	Relation type
ENSG00000261838	Chromatin interaction
ENSG00000245059	Chromatin interaction
ENSG00000166455	Chromatin interaction

Extended variants
information (count: 102 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs11866124	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap]
rs12444974	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap]
rs12918103	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[EUR][1000 genomes]
rs12919463	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12919980	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12920066	1.00[EUR][1000 genomes]
rs12921990	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12922449	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12924715	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12924719	1.00[EUR][1000 genomes]
rs12928381	1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12928648	1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[JPT][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12928790	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12929250	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12930046	1.00[EUR][1000 genomes]
rs12930202	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs12931555	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12931678	1.00[CHB][hapmap];1.00[EUR][1000 genomes]
rs12931766	1.00[EUR][1000 genomes]
rs12931852	1.00[EUR][1000 genomes]
rs12932119	1.00[EUR][1000 genomes]
rs12932272	1.00[EUR][1000 genomes]
rs12932466	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12933920	1.00[EUR][1000 genomes]
rs13329702	1.00[EUR][1000 genomes]
rs13333603	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13336113	1.00[EUR][1000 genomes]
rs16954505	1.00[CHB][hapmap];0.92[CHD][hapmap];0.85[JPT][hapmap]
rs2241408	1.00[EUR][1000 genomes]
rs2278021	1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2278023	1.00[CHB][hapmap];0.83[CHD][hapmap];0.81[ASN][1000 genomes]
rs2303214	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2549893	1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2602401	1.00[TSI][hapmap]
rs34075739	1.00[EUR][1000 genomes]
rs34082687	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34105513	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34262209	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34270219	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34277507	1.00[EUR][1000 genomes]
rs34529307	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34545373	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34586837	1.00[EUR][1000 genomes]
rs34638844	1.00[EUR][1000 genomes]
rs34699659	1.00[EUR][1000 genomes]
rs34966856	1.00[EUR][1000 genomes]
rs34992819	1.00[EUR][1000 genomes]
rs35011155	1.00[EUR][1000 genomes]
rs35110550	1.00[EUR][1000 genomes]
rs35117857	1.00[EUR][1000 genomes]
rs35161190	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35282277	1.00[EUR][1000 genomes]
rs35292442	1.00[EUR][1000 genomes]
rs35552248	1.00[EUR][1000 genomes]
rs35674322	1.00[EUR][1000 genomes]
rs35887664	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35890164	1.00[EUR][1000 genomes]
rs35899445	1.00[EUR][1000 genomes]
rs36040615	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs36052656	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs36056886	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs36099793	1.00[EUR][1000 genomes]
rs3759931	1.00[EUR][1000 genomes]
rs4889233	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5023849	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs57203494	1.00[EUR][1000 genomes]
rs6420421	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap]
rs71400131	1.00[EUR][1000 genomes]
rs71400134	1.00[EUR][1000 genomes]
rs71400135	1.00[EUR][1000 genomes]
rs71400136	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs71400137	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs71400138	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs71400140	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs71400141	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs71400142	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7200400	0.92[CHD][hapmap];0.89[EUR][1000 genomes]
rs7202356	1.00[EUR][1000 genomes]
rs754428	0.89[EUR][1000 genomes]
rs8043855	0.85[CHD][hapmap]
rs804893	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8062810	1.00[EUR][1000 genomes]
rs8177849	0.81[ASN][1000 genomes]
rs8177862	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8177863	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8177878	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8177891	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8177919	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8177938	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9922227	1.00[EUR][1000 genomes]
rs9930427	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948534	chr16:80867635-81160492	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv1064164	chr16:80918138-81126967	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	nsv542991	chr16:80918138-81126967	Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
4	nsv532569	chr16:80980356-81700149	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
5	nsv532597	chr16:81009718-81388348	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
6	nsv573338	chr16:81020393-81106944	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
7	nsv427984	chr16:81026691-81320341	Enhancers Genic enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
8	nsv1062724	chr16:81052312-81137007	Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
9	nsv1897	chr16:81060566-81105260	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
10	esv2422360	chr16:81066033-81180727	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
11	esv2751615	chr16:81093099-81307599	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81079400-81109800	Weak transcription	Brain Hippocampus Middle	brain
2	chr16:81080400-81110200	Weak transcription	Ovary	ovary
3	chr16:81092000-81106600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr16:81093000-81109800	Weak transcription	Brain Anterior Caudate	brain
5	chr16:81095000-81109400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr16:81095600-81109800	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr16:81095800-81110200	Weak transcription	Fetal Stomach	stomach
8	chr16:81097600-81104600	Weak transcription	Fetal Heart	heart
9	chr16:81098200-81107200	Weak transcription	Placenta	Placenta
10	chr16:81098800-81104800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr16:81100600-81102800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr16:81101000-81110000	Weak transcription	Fetal Brain Male	brain
13	chr16:81101600-81105200	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr16:81102000-81109800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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