Variant report

Variant	rs12924695
Chromosome Location	chr16:80604400-80604401
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RUNX3	chr16:80603357-80604451	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:80598414..80600726-chr16:80604095..80606613,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CDYL2-2	chr16:80604029-80604412	NONHSAT143901

Variant related genes	Relation type
ENSG00000260737	TF binding region

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907001	chr16:80405292-80620611	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1060621	chr16:80532848-80980616	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
3	nsv542989	chr16:80532848-80980616	Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
4	esv3327294	chr16:80603476-80606024	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv3323801	chr16:80603726-80605849	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv3338451	chr16:80604151-80605449	Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80599000-80607800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr16:80602600-80604400	Enhancers	Fetal Intestine Small	intestine
3	chr16:80602800-80604400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr16:80602800-80604400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr16:80602800-80604400	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr16:80602800-80604400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
7	chr16:80602800-80604400	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr16:80602800-80604400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr16:80602800-80604400	Enhancers	Fetal Intestine Large	intestine
10	chr16:80602800-80604400	Enhancers	NH-A	brain
11	chr16:80602800-80604400	Enhancers	NHEK	skin
12	chr16:80603000-80604400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr16:80603000-80604400	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr16:80603000-80604400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr16:80603000-80604400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
16	chr16:80603000-80604400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
17	chr16:80603000-80604400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
18	chr16:80603000-80604400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr16:80603000-80604400	Enhancers	Liver	Liver
20	chr16:80603000-80604400	Enhancers	Small Intestine	intestine
21	chr16:80603000-80604400	Enhancers	NHLF	lung
22	chr16:80603200-80604400	Enhancers	Primary T helper cells fromperipheralblood	blood
23	chr16:80603200-80604400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr16:80603200-80604400	Enhancers	Esophagus	oesophagus
25	chr16:80603200-80604400	Enhancers	Gastric	stomach
26	chr16:80603200-80604400	Enhancers	GM12878-XiMat	blood
27	chr16:80603400-80604400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr16:80603400-80604400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr16:80603400-80604400	Enhancers	Lung	lung
30	chr16:80603400-80604400	Enhancers	HSMMtube	muscle
31	chr16:80603600-80604400	Enhancers	Primary T cells fromperipheralblood	blood
32	chr16:80603800-80604400	Enhancers	Osteobl	bone
33	chr16:80603800-80606000	Weak transcription	Spleen	Spleen
34	chr16:80604000-80604400	Enhancers	HepG2	liver
35	chr16:80604200-80604400	Flanking Active TSS	Duodenum Mucosa	Duodenum
36	chr16:80604400-80605200	Weak transcription	Gastric	stomach

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