The 2.0 version of rSNPBase

Variant report

Variant rs12942666
Chromosome Location chr17:43499839-43499840
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:44 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr17:43482400-43501600 Weak transcription HMEC breast
2 chr17:43484400-43502600 Weak transcription Fetal Lung lung
3 chr17:43484600-43502200 Weak transcription Breast Myoepithelial Primary Cells Breast
4 chr17:43487400-43501400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
5 chr17:43488600-43501400 Weak transcription HUES6 Cell Line embryonic stem cell
6 chr17:43488800-43505400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
7 chr17:43489600-43505400 Weak transcription Brain Hippocampus Middle brain
8 chr17:43490000-43501400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
9 chr17:43490200-43503000 Weak transcription Adipose Nuclei Adipose
10 chr17:43490200-43505600 Weak transcription Thymus Thymus
11 chr17:43490600-43501800 Weak transcription Small Intestine intestine
12 chr17:43491800-43500000 Weak transcription HepG2 liver
13 chr17:43492000-43501400 Weak transcription Placenta Placenta
14 chr17:43492800-43501200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
15 chr17:43493000-43501600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
16 chr17:43493200-43500800 Weak transcription A549 lung
17 chr17:43493200-43503800 Weak transcription Spleen Spleen
18 chr17:43493400-43501200 Weak transcription Primary hematopoietic stem cells short term culture blood
19 chr17:43495800-43501800 Strong transcription Monocytes-CD14+_RO01746 blood
20 chr17:43496400-43500600 Weak transcription Rectal Mucosa Donor 29 rectum
21 chr17:43496400-43500800 Weak transcription Hela-S3 cervix
22 chr17:43496400-43501000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
23 chr17:43496400-43501000 Weak transcription Colonic Mucosa Colon
24 chr17:43496400-43501400 Weak transcription H1 Cell Line embryonic stem cell
25 chr17:43496400-43501400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
26 chr17:43496400-43501400 Weak transcription Gastric stomach
27 chr17:43496400-43501400 Weak transcription Lung lung
28 chr17:43496400-43502200 Weak transcription NHEK skin
29 chr17:43496600-43500800 Weak transcription Esophagus oesophagus
30 chr17:43496600-43501000 Weak transcription Sigmoid Colon Sigmoid Colon
31 chr17:43496600-43501400 Weak transcription Left Ventricle heart
32 chr17:43496600-43501400 Weak transcription Right Atrium heart
33 chr17:43496600-43501400 Weak transcription Right Ventricle heart
34 chr17:43496600-43502200 Weak transcription Stomach Mucosa stomach
35 chr17:43496600-43505800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
36 chr17:43497200-43502600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
37 chr17:43497600-43501600 Weak transcription Fetal Heart heart
38 chr17:43499000-43500800 Weak transcription Duodenum Mucosa Duodenum
39 chr17:43499000-43501400 Weak transcription Primary monocytes fromperipheralblood blood
40 chr17:43499200-43501000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
41 chr17:43499600-43500000 Strong transcription Rectal Mucosa Donor 31 rectum
42 chr17:43499600-43500800 Genic enhancers Fetal Intestine Small intestine
43 chr17:43499800-43500800 Enhancers Fetal Intestine Large intestine
44 chr17:43499800-43502600 Weak transcription Primary neutrophils fromperipheralblood blood

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Last update: Aug 31, 2015