Variant report

Variant rs12947718
Chromosome Location chr17:43493101-43493102
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:56 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr17:43482400-43501600 Weak transcription HMEC breast
2 chr17:43483200-43496000 Weak transcription Hela-S3 cervix
3 chr17:43484400-43502600 Weak transcription Fetal Lung lung
4 chr17:43484600-43502200 Weak transcription Breast Myoepithelial Primary Cells Breast
5 chr17:43487400-43496000 Weak transcription NHEK skin
6 chr17:43487400-43501400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
7 chr17:43487600-43493400 Enhancers Stomach Mucosa stomach
8 chr17:43487600-43496400 Weak transcription Brain Cingulate Gyrus brain
9 chr17:43487800-43494200 Genic enhancers Fetal Intestine Small intestine
10 chr17:43488600-43493200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
11 chr17:43488600-43496000 Weak transcription H1 Cell Line embryonic stem cell
12 chr17:43488600-43501400 Weak transcription HUES6 Cell Line embryonic stem cell
13 chr17:43488800-43505400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
14 chr17:43489000-43496000 Weak transcription Fetal Stomach stomach
15 chr17:43489600-43505400 Weak transcription Brain Hippocampus Middle brain
16 chr17:43489800-43493400 Genic enhancers Primary hematopoietic stem cells short term culture blood
17 chr17:43489800-43494200 Enhancers Primary monocytes fromperipheralblood blood
18 chr17:43490000-43494000 Weak transcription Colon Smooth Muscle Colon
19 chr17:43490000-43496000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
20 chr17:43490000-43501400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
21 chr17:43490200-43503000 Weak transcription Adipose Nuclei Adipose
22 chr17:43490200-43505600 Weak transcription Thymus Thymus
23 chr17:43490600-43493200 Enhancers Sigmoid Colon Sigmoid Colon
24 chr17:43490600-43501800 Weak transcription Small Intestine intestine
25 chr17:43491800-43500000 Weak transcription HepG2 liver
26 chr17:43492000-43501400 Weak transcription Placenta Placenta
27 chr17:43492400-43493200 Enhancers Primary hematopoietic stem cells blood
28 chr17:43492400-43493200 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
29 chr17:43492400-43493200 Flanking Active TSS Duodenum Mucosa Duodenum
30 chr17:43492400-43493200 Enhancers Gastric stomach
31 chr17:43492400-43493200 Flanking Active TSS Monocytes-CD14+_RO01746 blood
32 chr17:43492400-43493400 Enhancers iPS-15b Cell Line embryonic stem cell
33 chr17:43492600-43493200 Enhancers iPS DF 19.11 Cell Line embryonic stem cell
34 chr17:43492600-43493200 Enhancers Primary Natural Killer cells fromperipheralblood blood
35 chr17:43492600-43493200 Enhancers Primary mononuclear cells fromperipheralblood Blood
36 chr17:43492600-43493200 Enhancers Esophagus oesophagus
37 chr17:43492600-43493200 Genic enhancers Lung lung
38 chr17:43492600-43493200 Genic enhancers Spleen Spleen
39 chr17:43492800-43493200 Enhancers ES-I3 Cell Line embryonic stem cell
40 chr17:43492800-43493200 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
41 chr17:43492800-43493200 Enhancers Brain Anterior Caudate brain
42 chr17:43492800-43493200 Enhancers Duodenum Smooth Muscle Duodenum
43 chr17:43492800-43493200 Enhancers Left Ventricle heart
44 chr17:43492800-43493200 Transcr. at gene 5' and 3' Rectal Mucosa Donor 29 rectum
45 chr17:43492800-43493200 Enhancers Right Atrium heart
46 chr17:43492800-43493200 Enhancers A549 lung
47 chr17:43492800-43498200 Weak transcription Primary neutrophils fromperipheralblood blood
48 chr17:43492800-43501200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
49 chr17:43493000-43493200 Enhancers iPS DF 6.9 Cell Line embryonic stem cell
50 chr17:43493000-43493200 Enhancers K562 blood

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