Variant report

Variant	rs12956176
Chromosome Location	chr18:30270360-30270361
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:30263523..30266347-chr18:30268826..30270934,2	K562	blood:

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs1039142	0.81[ASN][1000 genomes]
rs1039143	0.81[ASN][1000 genomes]
rs10502605	1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs10502606	0.93[GIH][hapmap]
rs11081779	1.00[JPT][hapmap]
rs12454261	0.80[GIH][hapmap]
rs12454409	0.89[GIH][hapmap]
rs12456916	0.80[GIH][hapmap]
rs12456996	1.00[GIH][hapmap];0.85[MKK][hapmap]
rs12457924	1.00[JPT][hapmap]
rs12457977	1.00[JPT][hapmap]
rs12953998	0.81[ASN][1000 genomes]
rs12954299	0.81[ASN][1000 genomes]
rs12956370	0.90[AFR][1000 genomes]
rs12956607	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs12957691	1.00[JPT][hapmap]
rs12959986	0.87[AFR][1000 genomes]
rs12960282	0.85[AFR][1000 genomes]
rs12961920	0.92[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs12964622	0.81[AMR][1000 genomes]
rs12967142	1.00[JPT][hapmap]
rs12967667	0.80[GIH][hapmap]
rs12967862	0.89[ASW][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.87[AFR][1000 genomes]
rs12968405	0.87[AFR][1000 genomes]
rs12968480	0.80[GIH][hapmap]
rs12969622	1.00[JPT][hapmap]
rs12969651	0.92[CHD][hapmap];1.00[JPT][hapmap]
rs12969727	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs12969787	0.92[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap]
rs12969799	0.93[GIH][hapmap]
rs12970122	1.00[JPT][hapmap]
rs12970129	0.92[CHD][hapmap];1.00[JPT][hapmap]
rs12970312	1.00[ASW][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.97[MKK][hapmap];0.90[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs12970723	0.92[CHD][hapmap];1.00[JPT][hapmap]
rs12971179	0.81[ASN][1000 genomes]
rs1403762	0.80[GIH][hapmap]
rs1523579	0.87[AFR][1000 genomes]
rs17665358	0.85[GIH][hapmap]
rs17665504	0.89[ASN][1000 genomes]
rs17665516	0.87[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs1880113	0.85[AFR][1000 genomes]
rs2049335	0.92[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2049336	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2132819	0.92[CHD][hapmap];1.00[JPT][hapmap]
rs2140447	0.93[GIH][hapmap]
rs2173180	1.00[JPT][hapmap]
rs3848486	0.85[CEU][hapmap];0.84[EUR][1000 genomes]
rs4486983	1.00[JPT][hapmap]
rs4597394	0.83[AFR][1000 genomes]
rs55962103	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6506980	1.00[JPT][hapmap]
rs6506982	0.80[GIH][hapmap]
rs689525	1.00[JPT][hapmap]
rs7228954	0.80[GIH][hapmap]
rs7234525	0.92[CHD][hapmap];1.00[JPT][hapmap]
rs7236408	0.81[ASN][1000 genomes]
rs7239898	0.92[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap]
rs8093716	0.81[CEU][hapmap];0.84[EUR][1000 genomes]
rs8099131	0.80[GIH][hapmap]
rs9646509	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.84[MKK][hapmap];0.90[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs970688	0.84[CEU][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap]
rs9946664	0.92[CHD][hapmap];1.00[JPT][hapmap]
rs9951265	0.80[GIH][hapmap]
rs9951538	0.93[GIH][hapmap]
rs9953107	1.00[JPT][hapmap]
rs9953121	0.81[ASN][1000 genomes]
rs9953954	0.80[GIH][hapmap]
rs9953972	1.00[JPT][hapmap]
rs9954988	0.93[GIH][hapmap]
rs9954999	0.81[ASN][1000 genomes]
rs9955000	0.82[GIH][hapmap]
rs9955106	0.92[CHD][hapmap];1.00[JPT][hapmap]
rs9963370	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs9965685	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1060732	chr18:30267156-30304435	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1062187	chr18:30267156-30306081	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1056335	chr18:30267904-30305840	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1059928	chr18:30267904-30306081	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1062522	chr18:30268383-30306081	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:30252200-30277200	Weak transcription	Spleen	Spleen
2	chr18:30253200-30275400	Strong transcription	Primary B cells from cord blood	blood
3	chr18:30260400-30282200	Weak transcription	Fetal Kidney	kidney
4	chr18:30267400-30270800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr18:30268400-30273000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr18:30268600-30275400	Strong transcription	HepG2	liver
7	chr18:30268600-30276000	Strong transcription	Primary B cells from peripheral blood	blood

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