Variant report

Variant	rs12966119
Chromosome Location	chr18:28788726-28788727
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr18:28680863..28683275-chr18:28786590..28789100,4	MCF-7	breast:
2	chr18:28781990..28784653-chr18:28785130..28789773,4	MCF-7	breast:
3	chr18:28787689..28790379-chr18:28808328..28810205,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000134755	Chromatin interaction
ENSG00000265888	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs35808327	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3360998	chr18:28693111-28881812	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:28771000-28789000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr18:28783400-28791200	Weak transcription	Right Ventricle	heart
3	chr18:28784000-28789000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr18:28785200-28790800	Weak transcription	Fetal Heart	heart
5	chr18:28786600-28789800	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr18:28786800-28789800	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr18:28787000-28791000	Weak transcription	Esophagus	oesophagus
8	chr18:28787000-28791000	Weak transcription	Left Ventricle	heart
9	chr18:28787200-28789200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr18:28787200-28789400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr18:28787200-28789600	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr18:28787200-28805600	Weak transcription	Pancreas	Pancrea
13	chr18:28787600-28789000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr18:28787600-28789600	Enhancers	Fetal Intestine Small	intestine
15	chr18:28787600-28789600	Enhancers	NHEK	skin
16	chr18:28787600-28791000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr18:28787600-28794600	Enhancers	Fetal Intestine Large	intestine
18	chr18:28787600-28797000	Weak transcription	Right Atrium	heart
19	chr18:28787800-28792600	Weak transcription	HepG2	liver
20	chr18:28788000-28789000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr18:28788000-28789000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr18:28788000-28789000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr18:28788000-28789200	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr18:28788000-28791000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr18:28788000-28796600	Weak transcription	Placenta	Placenta
26	chr18:28788200-28790800	Weak transcription	Stomach Mucosa	stomach
27	chr18:28788200-28791000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr18:28788200-28791200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr18:28788400-28789400	Enhancers	HUES48 Cell Line	embryonic stem cell
30	chr18:28788400-28789600	Enhancers	iPS-18 Cell Line	embryonic stem cell
31	chr18:28788400-28791000	Weak transcription	Duodenum Mucosa	Duodenum
32	chr18:28788400-28791000	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr18:28788400-28792200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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