Variant report

Variant	rs12968405
Chromosome Location	chr18:30318163-30318164
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 136 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:136)

rs_ID	r²[population]
rs1039142	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1039143	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10502605	0.95[CEU][hapmap];0.89[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10502606	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10502607	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11081779	0.85[CEU][hapmap]
rs12454261	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12454337	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12454409	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12456916	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12456996	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12457924	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12457977	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12953998	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12954299	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12956176	0.87[AFR][1000 genomes]
rs12956194	0.88[EUR][1000 genomes]
rs12956370	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12956427	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12956607	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12957691	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12959986	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12960282	0.95[CEU][hapmap];0.89[CHB][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12961920	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12964622	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12967142	0.95[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12967667	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12967862	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12968480	0.95[CEU][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs12969530	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12969622	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs12969651	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs12969727	1.00[CEU][hapmap];0.89[CHB][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12969760	0.80[EUR][1000 genomes]
rs12969787	1.00[CEU][hapmap];0.89[CHB][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12969799	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12970122	1.00[CEU][hapmap];0.86[CHB][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12970129	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12970312	0.95[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12970723	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12970991	0.85[EUR][1000 genomes]
rs12971179	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1357535	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1357536	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1357538	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1403760	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1403761	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1403762	0.91[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1523579	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1523591	0.95[CEU][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs1523592	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16963829	1.00[JPT][hapmap]
rs17665358	1.00[JPT][hapmap]
rs17665504	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17665516	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17665734	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17665806	0.85[EUR][1000 genomes]
rs1851700	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1880113	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2030622	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2049335	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2049336	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2132819	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2140447	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2140448	0.95[CEU][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs2140449	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2173180	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs2421641	0.95[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs3848486	1.00[JPT][hapmap]
rs4597394	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55962103	0.92[AFR][1000 genomes]
rs6506979	0.84[EUR][1000 genomes]
rs6506980	0.91[CEU][hapmap];0.82[EUR][1000 genomes]
rs6506982	0.95[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6506983	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6506984	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6506985	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6506986	0.95[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs689523	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs689525	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs7228647	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7228954	0.95[CEU][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs7230048	0.91[CEU][hapmap];0.91[EUR][1000 genomes]
rs7230052	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7230438	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7230625	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7232695	0.91[EUR][1000 genomes]
rs7233023	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7233463	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs7234525	0.91[CEU][hapmap];0.85[EUR][1000 genomes]
rs7234772	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7236408	0.89[EUR][1000 genomes]
rs7237843	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7239898	0.91[CEU][hapmap];0.84[EUR][1000 genomes]
rs7241764	0.88[EUR][1000 genomes]
rs7242010	0.85[EUR][1000 genomes]
rs8083192	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8089651	0.83[EUR][1000 genomes]
rs8093716	1.00[JPT][hapmap]
rs8098984	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8099131	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8099133	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8099299	0.91[EUR][1000 genomes]
rs9646509	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9945156	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9946368	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9946664	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs9951265	0.95[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9951538	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9952507	0.91[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs9952882	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9953014	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9953107	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9953121	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9953954	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9953972	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs9953979	0.88[EUR][1000 genomes]
rs9954196	0.88[EUR][1000 genomes]
rs9954483	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9954691	0.86[EUR][1000 genomes]
rs9954988	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9954999	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9955000	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9955063	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9955106	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9957809	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9957814	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9958329	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9962132	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9963102	0.90[EUR][1000 genomes]
rs9963370	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9963435	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9965685	1.00[JPT][hapmap]
rs9965787	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9965869	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9966576	0.87[EUR][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:30311000-30322600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr18:30311200-30321400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr18:30311200-30322800	Weak transcription	Fetal Kidney	kidney
4	chr18:30317400-30318200	Enhancers	HUVEC	blood vessel
5	chr18:30317400-30319200	Genic enhancers	Primary B cells from cord blood	blood
6	chr18:30317400-30322800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr18:30317600-30318400	Enhancers	Primary B cells from peripheral blood	blood
8	chr18:30317600-30319000	Strong transcription	HepG2	liver
9	chr18:30317800-30321400	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr18:30317800-30322600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr18:30318000-30321600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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