Variant report

Variant	rs12969200
Chromosome Location	chr18:28922534-28922535
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10164077	1.00[CHB][hapmap];0.83[MEX][hapmap]
rs10438930	1.00[CHB][hapmap]
rs11081691	1.00[CHB][hapmap];0.83[MEX][hapmap]
rs1154850	1.00[CHB][hapmap]
rs11663622	1.00[CHB][hapmap]
rs11663676	1.00[CHB][hapmap]
rs11872734	1.00[CHB][hapmap]
rs11875510	1.00[CHB][hapmap]
rs11875560	1.00[CHB][hapmap]
rs12607370	1.00[CHB][hapmap];0.83[MEX][hapmap]
rs12962355	1.00[CHB][hapmap];0.83[MEX][hapmap]
rs12963302	1.00[CHB][hapmap];0.83[MEX][hapmap]
rs12967407	1.00[CHB][hapmap];0.83[MEX][hapmap]
rs1426309	1.00[CHB][hapmap];0.83[MEX][hapmap]
rs1426310	1.00[CHB][hapmap];0.83[MEX][hapmap]
rs1426311	1.00[CHB][hapmap];0.83[MEX][hapmap]
rs17715828	0.92[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2007149	1.00[CHB][hapmap]
rs2114269	1.00[CHB][hapmap];0.83[MEX][hapmap]
rs2162273	1.00[CHB][hapmap]
rs2199301	1.00[CHB][hapmap];0.83[MEX][hapmap]
rs2219583	1.00[CHB][hapmap]
rs2901124	1.00[CHB][hapmap];0.83[MEX][hapmap]
rs2901125	1.00[CHB][hapmap]
rs3810007	1.00[CHB][hapmap]
rs3810008	1.00[CHB][hapmap]
rs4356544	1.00[CHB][hapmap]
rs6506914	1.00[CHB][hapmap];0.83[MEX][hapmap]
rs6506916	1.00[CHB][hapmap]
rs7233743	1.00[CHB][hapmap]
rs7234662	1.00[CHB][hapmap]
rs7234854	1.00[CHB][hapmap]
rs7235354	1.00[CHB][hapmap];0.83[MEX][hapmap]
rs7235951	1.00[CHB][hapmap]
rs7235975	1.00[CHB][hapmap]
rs7236225	1.00[CHB][hapmap]
rs7237370	1.00[CHB][hapmap]
rs7237383	1.00[CHB][hapmap]
rs7237419	1.00[CHB][hapmap]
rs765054	1.00[CHB][hapmap]
rs8087410	1.00[CHB][hapmap]
rs8091151	1.00[CHB][hapmap]
rs8091579	1.00[CHB][hapmap]
rs8091847	1.00[CHB][hapmap]
rs9947296	0.82[CHB][hapmap]
rs9947444	1.00[CHB][hapmap]
rs9948210	1.00[CHB][hapmap];0.83[MEX][hapmap]
rs9950209	1.00[CHB][hapmap]
rs9950622	1.00[CHB][hapmap];0.83[MEX][hapmap]
rs9951341	1.00[CHB][hapmap]
rs9956026	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066692	chr18:28856066-29190505	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv543674	chr18:28856066-29190505	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv916545	chr18:28898800-29166364	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv909516	chr18:28910615-28946104	Active TSS ZNF genes & repeats Enhancers Strong transcription Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:28899600-28927200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr18:28904800-28933800	Weak transcription	Esophagus	oesophagus
3	chr18:28913600-28925000	Weak transcription	Liver	Liver

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