Variant report

Variant	rs13000
Chromosome Location	chr14:106173553-106173554
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr14:106161457-106176992	GM12892	blood:	n/a	n/a
2	FOXM1	chr14:106173321-106175011	GM12878	blood:	n/a	n/a
3	STAT5A	chr14:106173420-106173808	GM12878	blood:	n/a	n/a
4	BCLAF1	chr14:106173194-106173802	GM12878	blood:	n/a	n/a
5	NFATC1	chr14:106173396-106173791	GM12878	blood:	n/a	n/a
6	ATF2	chr14:106173351-106173898	GM12878	blood:	n/a	n/a
7	MTA3	chr14:106171387-106173900	GM12878	blood:	n/a	n/a
8	FOXM1	chr14:106171831-106174518	GM12878	blood:	n/a	n/a
9	POLR2A	chr14:106171441-106177208	GM12892	blood:	n/a	n/a
10	POU2F2	chr14:106171817-106175885	GM12878	blood:	n/a	chr14:106174671-106174683
11	POLR2A	chr14:106161382-106176102	GM12878	blood:	n/a	n/a
12	NFATC1	chr14:106173351-106173890	GM12878	blood:	n/a	n/a
13	PML	chr14:106171371-106176101	GM12878	blood:	n/a	chr14:106172294-106172302
14	POLR2A	chr14:106164734-106176145	GM12878	blood:	n/a	n/a
15	MTA3	chr14:106173407-106173806	GM12878	blood:	n/a	n/a
16	POLR2A	chr14:106161465-106177165	GM12892	blood:	n/a	n/a
17	POLR2A	chr14:106166599-106176124	GM12878	blood:	n/a	n/a
18	RUNX3	chr14:106173431-106173791	GM12878	blood:	n/a	n/a
19	POLR2A	chr14:106173344-106173739	GM12878	blood:	n/a	n/a
20	RUNX3	chr14:106173415-106173795	GM12878	blood:	n/a	n/a
21	POLR2A	chr14:106171828-106177267	GM12892	blood:	n/a	n/a
22	POLR2A	chr14:106164703-106176176	GM12878	blood:	n/a	n/a
23	EBF1	chr14:106173494-106173904	GM12878	blood:	n/a	n/a
24	POLR2A	chr14:106173360-106175280	GM10847	blood:	n/a	n/a
25	NFIC	chr14:106171824-106173812	GM12878	blood:	n/a	n/a
26	POLR2A	chr14:106171418-106176108	GM12878	blood:	n/a	n/a
27	POLR2A	chr14:106161294-106176337	GM12878	blood:	n/a	n/a
28	POLR2A	chr14:106161746-106177141	GM12892	blood:	n/a	n/a
29	STAT5A	chr14:106171395-106173795	GM12878	blood:	n/a	n/a
30	TCF3	chr14:106173410-106174060	GM12878	blood:	n/a	n/a

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TMEM121-2	chr14:106173444-106173899	NONHSAT040379

Variant related genes	Relation type
ENSG00000253701	TF binding region

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10130064	1.00[EUR][1000 genomes]
rs10140012	1.00[EUR][1000 genomes]
rs10147883	1.00[EUR][1000 genomes]
rs11552998	1.00[EUR][1000 genomes]
rs11623609	1.00[EUR][1000 genomes]
rs11845835	1.00[EUR][1000 genomes]
rs11848125	1.00[EUR][1000 genomes]
rs11851505	1.00[EUR][1000 genomes]
rs12431652	1.00[EUR][1000 genomes]
rs12431653	1.00[EUR][1000 genomes]
rs2104053	1.00[EUR][1000 genomes]
rs2753508	1.00[EUR][1000 genomes]
rs2753557	1.00[EUR][1000 genomes]
rs28379859	1.00[EUR][1000 genomes]
rs28578923	1.00[EUR][1000 genomes]
rs28581525	1.00[EUR][1000 genomes]
rs28582906	1.00[EUR][1000 genomes]
rs28627103	1.00[EUR][1000 genomes]
rs28719009	1.00[EUR][1000 genomes]
rs3923867	1.00[EUR][1000 genomes]
rs4983362	1.00[EUR][1000 genomes]
rs4983477	1.00[EUR][1000 genomes]
rs4983481	1.00[EUR][1000 genomes]
rs58503622	1.00[EUR][1000 genomes]
rs60701849	1.00[EUR][1000 genomes]
rs61986371	1.00[EUR][1000 genomes]
rs6576114	1.00[EUR][1000 genomes]
rs6576119	1.00[EUR][1000 genomes]
rs6576121	1.00[EUR][1000 genomes]
rs7143643	1.00[EUR][1000 genomes]
rs7151762	1.00[EUR][1000 genomes]
rs7494106	1.00[EUR][1000 genomes]
rs9671515	1.00[EUR][1000 genomes]
rs9671964	1.00[EUR][1000 genomes]
rs9672055	1.00[EUR][1000 genomes]
rs9672072	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530813	chr14:105607701-106453697	Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	149 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:106166200-106174600	Weak transcription	Spleen	Spleen
2	chr14:106172000-106173600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr14:106172000-106174400	Enhancers	Primary B cells from cord blood	blood
4	chr14:106172000-106174400	Genic enhancers	Primary B cells from peripheral blood	blood
5	chr14:106172200-106175000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr14:106172400-106173600	Enhancers	GM12878-XiMat	blood
7	chr14:106172600-106173800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr14:106173400-106174800	Genic enhancers	Placenta	Placenta
9	chr14:106173400-106180200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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