Variant report

Variant	rs13008982
Chromosome Location	chr2:37404327-37404328
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:37402555..37406062-chr2:37411468..37414778,3	K562	blood:
2	chr2:37403022..37404611-chr2:37417027..37419615,2	K562	blood:
3	chr2:37402760..37404776-chr2:37408540..37411401,3	MCF-7	breast:
4	chr2:37403335..37405518-chr2:37414349..37415950,2	MCF-7	breast:
5	chr2:37394145..37396393-chr2:37403538..37405289,2	K562	blood:

Variant related genes	Relation type
ENSG00000138068	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10168505	0.95[ASN][1000 genomes]
rs10182091	0.82[ASN][1000 genomes]
rs10205526	0.82[ASN][1000 genomes]
rs10205833	0.82[ASN][1000 genomes]
rs10209193	0.82[ASN][1000 genomes]
rs10865122	0.82[ASN][1000 genomes]
rs11124565	0.82[ASN][1000 genomes]
rs11686193	0.82[ASN][1000 genomes]
rs11885155	0.82[ASN][1000 genomes]
rs11885265	0.82[ASN][1000 genomes]
rs11895771	0.82[ASN][1000 genomes]
rs11895882	0.82[ASN][1000 genomes]
rs12988288	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12994806	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13022271	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13392521	0.82[ASN][1000 genomes]
rs13401374	0.82[ASN][1000 genomes]
rs2111630	0.81[ASN][1000 genomes]
rs2373190	0.82[ASN][1000 genomes]
rs2373191	0.82[ASN][1000 genomes]
rs28463756	0.82[ASN][1000 genomes]
rs28627823	0.81[ASN][1000 genomes]
rs4374352	0.82[ASN][1000 genomes]
rs4459710	0.82[ASN][1000 genomes]
rs4670672	0.82[ASN][1000 genomes]
rs4670673	0.82[ASN][1000 genomes]
rs4670675	0.81[ASN][1000 genomes]
rs58868860	0.82[ASN][1000 genomes]
rs59380055	0.81[ASN][1000 genomes]
rs62134996	0.82[ASN][1000 genomes]
rs62134998	0.82[ASN][1000 genomes]
rs62135000	0.82[ASN][1000 genomes]
rs62135001	0.82[ASN][1000 genomes]
rs62135002	0.82[ASN][1000 genomes]
rs6544060	1.00[ASN][1000 genomes]
rs6544061	0.99[ASN][1000 genomes]
rs6544062	0.99[ASN][1000 genomes]
rs6704905	0.87[ASN][1000 genomes]
rs6708343	0.82[ASN][1000 genomes]
rs6718775	0.82[ASN][1000 genomes]
rs6720068	0.88[EUR][1000 genomes]
rs6724820	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6728951	0.82[ASN][1000 genomes]
rs6742281	0.82[ASN][1000 genomes]
rs6747446	0.83[ASN][1000 genomes]
rs6750763	0.82[ASN][1000 genomes]
rs7565331	0.99[ASN][1000 genomes]
rs7601827	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13008982	CEBPZ	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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