Variant report

Variant	rs13013946
Chromosome Location	chr2:134469455-134469456
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:134468524..134472255-chr2:134473373..134475498,3	MCF-7	breast:
2	chr2:134463568..134466020-chr2:134468723..134471299,2	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11884849	0.88[ASN][1000 genomes]
rs11888079	0.88[ASN][1000 genomes]
rs12989658	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12993296	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12993449	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12995146	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12996062	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12998809	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12998999	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13007239	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13008209	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13011121	0.88[ASN][1000 genomes]
rs13013221	0.88[ASN][1000 genomes]
rs13015979	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs13021524	1.00[CHB][hapmap]
rs13028951	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13032020	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13032581	0.88[ASN][1000 genomes]
rs13033059	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs13036190	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1374405	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1446752	0.88[ASN][1000 genomes]
rs1562348	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1584239	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1653801	1.00[CHB][hapmap]
rs1653804	1.00[CHB][hapmap]
rs1669458	1.00[CHB][hapmap]
rs1867897	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1869054	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34454875	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35961497	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs36066383	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4256007	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4440017	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4536693	0.88[ASN][1000 genomes]
rs4953886	1.00[CHB][hapmap]
rs62167107	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6716182	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6716309	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6726369	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6726463	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7568394	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7568496	0.88[ASN][1000 genomes]
rs7574116	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs891822	1.00[CHB][hapmap]
rs9917166	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003624	chr2:134126928-134583203	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1006101	chr2:134263288-134973917	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1013713	chr2:134322236-134644574	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv535931	chr2:134322236-134644574	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:134467000-134472400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:134467400-134472800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr2:134468000-134477200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr2:134468400-134469600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr2:134468400-134469600	Enhancers	Brain Cingulate Gyrus	brain
6	chr2:134468400-134470000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr2:134468400-134470200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr2:134468800-134469600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr2:134469200-134474600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr2:134469400-134474600	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr2:134469400-134475400	Weak transcription	Brain Substantia Nigra	brain

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