Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10496709	0.81[ASN][1000 genomes]
rs12467346	0.81[ASN][1000 genomes]
rs12472423	0.81[ASN][1000 genomes]
rs1374406	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1446748	0.83[ASN][1000 genomes]
rs1446749	0.83[ASN][1000 genomes]
rs1470510	0.82[ASN][1000 genomes]
rs1562349	0.82[ASN][1000 genomes]
rs16828705	0.83[ASN][1000 genomes]
rs16828728	0.83[ASN][1000 genomes]
rs1867894	0.82[ASN][1000 genomes]
rs1992783	0.82[ASN][1000 genomes]
rs1992784	0.82[ASN][1000 genomes]
rs4369917	0.81[ASN][1000 genomes]
rs55932202	0.81[ASN][1000 genomes]
rs56111185	0.82[ASN][1000 genomes]
rs56341649	0.83[ASN][1000 genomes]
rs58457553	0.82[ASN][1000 genomes]
rs6706052	0.81[ASN][1000 genomes]
rs72843247	0.81[ASN][1000 genomes]
rs72843252	0.82[ASN][1000 genomes]
rs72843260	0.83[ASN][1000 genomes]
rs72843263	0.83[ASN][1000 genomes]
rs746838	0.84[EUR][1000 genomes]
rs921087	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003624	chr2:134126928-134583203	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1006101	chr2:134263288-134973917	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1013713	chr2:134322236-134644574	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv535931	chr2:134322236-134644574	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:134505400-134507200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr2:134505800-134511400	Weak transcription	Left Ventricle	heart
3	chr2:134506000-134507000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:134506000-134507800	Weak transcription	Fetal Kidney	kidney
5	chr2:134506000-134512800	Weak transcription	NHLF	lung
6	chr2:134506200-134507000	Weak transcription	Fetal Heart	heart
7	chr2:134506600-134509200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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