Variant report

Variant	rs13023958
Chromosome Location	chr2:174133532-174133533
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:174133324..174136222-chr2:174137926..174139659,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11685378	0.90[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11692098	0.95[CEU][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11695778	0.96[ASN][1000 genomes]
rs12618933	0.95[CEU][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12620774	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13031154	0.96[ASN][1000 genomes]
rs3769148	0.95[CEU][hapmap];0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs66691946	0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs752077	0.95[CEU][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011724	chr2:173916482-174231908	Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:174083400-174136400	Weak transcription	Esophagus	oesophagus
2	chr2:174099600-174134400	Weak transcription	Placenta	Placenta
3	chr2:174101600-174136400	Weak transcription	Hela-S3	cervix
4	chr2:174101800-174136200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr2:174105000-174134400	Weak transcription	Colon Smooth Muscle	Colon
6	chr2:174121600-174133600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
7	chr2:174122600-174136400	Weak transcription	Stomach Mucosa	stomach
8	chr2:174123800-174136800	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr2:174126000-174138000	Weak transcription	Psoas Muscle	Psoas
10	chr2:174126400-174138800	Weak transcription	Right Ventricle	heart
11	chr2:174127600-174133800	Weak transcription	HepG2	liver
12	chr2:174128200-174136200	Weak transcription	HSMMtube	muscle
13	chr2:174130000-174135200	Weak transcription	Fetal Intestine Small	intestine
14	chr2:174130000-174136200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr2:174130000-174136400	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr2:174130000-174136400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr2:174130000-174136600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr2:174130000-174137800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr2:174130200-174134200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr2:174130200-174135600	Weak transcription	Duodenum Mucosa	Duodenum
21	chr2:174130400-174133600	Weak transcription	GM12878-XiMat	blood
22	chr2:174130400-174133800	Weak transcription	Primary hematopoietic stem cells	blood
23	chr2:174131000-174137800	Weak transcription	Brain Germinal Matrix	brain
24	chr2:174131200-174136400	Weak transcription	NHEK	skin
25	chr2:174131200-174139200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr2:174131400-174134000	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr2:174131400-174134000	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr2:174131400-174134000	Weak transcription	Fetal Lung	lung
29	chr2:174131400-174134000	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr2:174131400-174134400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr2:174131400-174134600	Weak transcription	Fetal Stomach	stomach
32	chr2:174131400-174135200	Weak transcription	Aorta	Aorta
33	chr2:174131400-174135200	Weak transcription	Lung	lung
34	chr2:174131400-174135800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr2:174131400-174136000	Weak transcription	Pancreas	Pancrea
36	chr2:174131400-174136200	Weak transcription	Gastric	stomach
37	chr2:174131400-174136400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr2:174131400-174136600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr2:174131400-174136800	Weak transcription	A549	lung
40	chr2:174131600-174135000	Weak transcription	Primary monocytes fromperipheralblood	blood
41	chr2:174131600-174136000	Weak transcription	Ovary	ovary
42	chr2:174131600-174136400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr2:174131600-174136400	Weak transcription	Osteobl	bone
44	chr2:174131800-174133600	Weak transcription	Fetal Muscle Leg	muscle
45	chr2:174131800-174134200	Weak transcription	Dnd41	blood
46	chr2:174132000-174134800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr2:174132000-174135200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr2:174132000-174136200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr2:174132000-174136600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr2:174132800-174135000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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