Variant report

Variant	rs13025293
Chromosome Location	chr2:182028191-182028192
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs11885073	1.00[AMR][1000 genomes]
rs11885499	1.00[AMR][1000 genomes]
rs11890538	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11891901	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11894969	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11896331	1.00[AMR][1000 genomes]
rs11899193	1.00[AMR][1000 genomes]
rs11900496	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11901821	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11902135	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11902832	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16867374	1.00[AMR][1000 genomes]
rs55742474	1.00[AMR][1000 genomes]
rs55980983	1.00[AMR][1000 genomes]
rs56276437	1.00[AMR][1000 genomes]
rs56370920	1.00[AMR][1000 genomes]
rs57670948	1.00[AMR][1000 genomes]
rs57698592	1.00[AMR][1000 genomes]
rs59850603	1.00[AMR][1000 genomes]
rs60753078	1.00[AMR][1000 genomes]
rs6704898	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6715119	1.00[AMR][1000 genomes]
rs6716249	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6717911	1.00[AMR][1000 genomes]
rs6721914	1.00[AMR][1000 genomes]
rs6737799	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6740342	1.00[AMR][1000 genomes]
rs73974706	1.00[AMR][1000 genomes]
rs73974713	1.00[AMR][1000 genomes]
rs73974714	1.00[AMR][1000 genomes]
rs73974721	1.00[AMR][1000 genomes]
rs73974754	1.00[AMR][1000 genomes]
rs73974755	1.00[AMR][1000 genomes]
rs73974756	1.00[AMR][1000 genomes]
rs73974761	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73974765	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73974766	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73974803	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73976805	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73976807	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73976817	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73976819	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73976820	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73976867	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73977152	1.00[AMR][1000 genomes]
rs73977153	1.00[AMR][1000 genomes]
rs73977154	1.00[AMR][1000 genomes]
rs73977156	1.00[AMR][1000 genomes]
rs7570421	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9967843	1.00[AMR][1000 genomes]
rs9967879	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431824	chr2:181946115-182118559	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1005870	chr2:181968637-182921439	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv536063	chr2:181968637-182921439	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	nsv459954	chr2:181975252-182040293	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv583910	chr2:181975252-182040293	ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:182021200-182030000	Weak transcription	Thymus	Thymus
2	chr2:182026000-182029600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr2:182026600-182028200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr2:182026800-182028200	Enhancers	Primary T cells fromperipheralblood	blood
5	chr2:182026800-182029600	Enhancers	GM12878-XiMat	blood
6	chr2:182027000-182029800	Enhancers	Primary T cells from cord blood	blood
7	chr2:182027400-182029800	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr2:182027600-182028400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr2:182027600-182028600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr2:182027600-182029600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr2:182027600-182029600	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr2:182027600-182030000	Enhancers	Primary B cells from cord blood	blood
13	chr2:182027800-182028200	Enhancers	Fetal Thymus	thymus
14	chr2:182027800-182028200	Enhancers	Dnd41	blood
15	chr2:182027800-182028600	Enhancers	Primary B cells from peripheral blood	blood
16	chr2:182027800-182029600	Enhancers	Primary T helper naive cells from peripheral blood	blood
17	chr2:182027800-182029800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
18	chr2:182027800-182029800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr2:182027800-182030800	Enhancers	Primary monocytes fromperipheralblood	blood
20	chr2:182027800-182030800	Enhancers	Primary hematopoietic stem cells	blood
21	chr2:182027800-182030800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr2:182028000-182028200	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
23	chr2:182028000-182028200	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
24	chr2:182028000-182028600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
25	chr2:182028000-182028600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
26	chr2:182028000-182029600	Enhancers	Monocytes-CD14+_RO01746	blood
27	chr2:182028000-182030600	Enhancers	Primary hematopoietic stem cells short term culture	blood

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