Variant report

Variant	rs13026611
Chromosome Location	chr2:128153335-128153336
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:128144670..128146902-chr2:128151414..128153529,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000236682	Chromatin interaction
ENSG00000169967	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10803585	0.89[AFR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11901355	0.93[AFR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12052483	0.89[AFR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12477214	0.80[ASN][1000 genomes]
rs12479003	0.85[AFR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12989081	0.84[ASN][1000 genomes]
rs12989154	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12991768	0.91[AFR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13026597	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13029237	0.87[AFR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1850689	0.84[ASN][1000 genomes]
rs2090574	0.89[AFR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2896980	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34832797	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35293119	0.84[ASN][1000 genomes]
rs4662580	0.80[ASN][1000 genomes]
rs4662722	0.80[ASN][1000 genomes]
rs4662725	0.89[AFR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62157555	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62160261	0.99[AFR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7568261	0.83[ASN][1000 genomes]
rs7580658	0.93[AFR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7587639	0.92[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs7589451	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9789510	0.89[AFR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:128146000-128158400	Weak transcription	Ovary	ovary
2	chr2:128146400-128155200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr2:128146400-128165200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr2:128146600-128154200	Weak transcription	Brain Germinal Matrix	brain
5	chr2:128146600-128155000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr2:128146600-128155000	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr2:128146600-128155200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr2:128146600-128155200	Weak transcription	Esophagus	oesophagus
9	chr2:128146600-128155400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr2:128146600-128155400	Weak transcription	Brain Hippocampus Middle	brain
11	chr2:128146600-128155400	Weak transcription	Brain Substantia Nigra	brain
12	chr2:128146600-128155400	Weak transcription	Placenta	Placenta
13	chr2:128146600-128155400	Weak transcription	Spleen	Spleen
14	chr2:128146600-128155600	Weak transcription	Brain Anterior Caudate	brain
15	chr2:128146600-128155600	Weak transcription	Colonic Mucosa	Colon
16	chr2:128146600-128157200	Weak transcription	Fetal Stomach	stomach
17	chr2:128146600-128162600	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr2:128146800-128158200	Weak transcription	Small Intestine	intestine
19	chr2:128147000-128155000	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr2:128148000-128154000	Weak transcription	Primary T cells from cord blood	blood
21	chr2:128148600-128155000	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr2:128148600-128155200	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr2:128148800-128155200	Weak transcription	GM12878-XiMat	blood
24	chr2:128148800-128155400	Weak transcription	HepG2	liver
25	chr2:128149000-128155200	Weak transcription	Fetal Intestine Large	intestine
26	chr2:128150200-128155400	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr2:128150400-128155200	Weak transcription	HSMM	muscle
28	chr2:128150400-128165000	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr2:128150600-128155200	Weak transcription	HSMMtube	muscle
30	chr2:128150600-128155400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr2:128150600-128158200	Weak transcription	Fetal Thymus	thymus
32	chr2:128150800-128155000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr2:128150800-128155400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr2:128151000-128155000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr2:128151000-128155200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr2:128151000-128155200	Weak transcription	Hela-S3	cervix
37	chr2:128151000-128155400	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr2:128151000-128155400	Weak transcription	HMEC	breast
39	chr2:128151000-128155400	Weak transcription	Osteobl	bone
40	chr2:128151200-128155200	Weak transcription	K562	blood
41	chr2:128152000-128158200	Weak transcription	Primary B cells from peripheral blood	blood
42	chr2:128152200-128155000	Weak transcription	Fetal Muscle Leg	muscle
43	chr2:128152200-128155400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr2:128152400-128155200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr2:128152400-128155600	Weak transcription	Lung	lung
46	chr2:128152400-128155800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
47	chr2:128152400-128158200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr2:128152600-128155200	Weak transcription	Fetal Intestine Small	intestine
49	chr2:128152600-128155200	Weak transcription	A549	lung
50	chr2:128152600-128165800	Weak transcription	Aorta	Aorta

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