Variant report

Variant	rs13029237
Chromosome Location	chr2:128147854-128147855
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:44)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:44 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr2:128147140-128148064	GM12878	blood:	n/a	n/a
2	CREB1	chr2:128147224-128147970	GM12878	blood:	n/a	n/a
3	NFIC	chr2:128147190-128148037	GM12878	blood:	n/a	n/a
4	MAX	chr2:128147753-128147926	K562	blood:	n/a	n/a
5	USF2	chr2:128147677-128147935	H1-hESC	embryonic stem cell:	n/a	n/a
6	POLR2A	chr2:128147266-128147934	HL-60	blood:	n/a	n/a
7	EP300	chr2:128147391-128147903	GM12878	blood:	n/a	n/a
8	BHLHE40	chr2:128147788-128147868	K562	blood:	n/a	n/a
9	BCLAF1	chr2:128147180-128148027	GM12878	blood:	n/a	n/a
10	RUNX3	chr2:128147260-128147922	GM12878	blood:	n/a	n/a
11	CREB1	chr2:128147096-128147969	GM12878	blood:	n/a	n/a
12	RUNX3	chr2:128147237-128147942	GM12878	blood:	n/a	n/a
13	USF1	chr2:128147676-128147894	GM12878	blood:	n/a	n/a
14	BHLHE40	chr2:128147383-128147914	GM12878	blood:	n/a	n/a
15	POLR2A	chr2:128147255-128147986	HL-60	blood:	n/a	n/a
16	SPI1	chr2:128147680-128147973	GM12878	blood:	n/a	n/a
17	YY1	chr2:128147576-128147902	GM12892	blood:	n/a	n/a
18	YY1	chr2:128147557-128147980	GM12878	blood:	n/a	n/a
19	USF1	chr2:128147607-128147992	H1-hESC	embryonic stem cell:	n/a	n/a
20	NFIC	chr2:128147169-128148067	GM12878	blood:	n/a	n/a
21	EP300	chr2:128147285-128147918	GM12878	blood:	n/a	n/a
22	MAZ	chr2:128147647-128147856	K562	blood:	n/a	n/a
23	USF2	chr2:128147458-128147947	GM12878	blood:	n/a	n/a
24	USF2	chr2:128147644-128147876	K562	blood:	n/a	n/a
25	RCOR1	chr2:128147466-128147922	K562	blood:	n/a	n/a
26	USF1	chr2:128147700-128147859	GM12878	blood:	n/a	n/a
27	MTA3	chr2:128147208-128148041	GM12878	blood:	n/a	n/a
28	NFE2	chr2:128147665-128147870	GM12878	blood:	n/a	n/a
29	CHD2	chr2:128147356-128147857	GM12878	blood:	n/a	n/a
30	YY1	chr2:128147319-128147917	GM12878	blood:	n/a	n/a
31	ATF2	chr2:128147251-128147972	GM12878	blood:	n/a	n/a
32	YY1	chr2:128147679-128147913	K562	blood:	n/a	n/a
33	MAX	chr2:128147419-128147977	NB4	blood:	n/a	n/a
34	YY1	chr2:128147681-128147988	GM12891	blood:	n/a	n/a
35	SPI1	chr2:128147677-128148029	GM12891	blood:	n/a	n/a
36	IKZF1	chr2:128147661-128147901	GM12878	blood:	n/a	n/a
37	YY1	chr2:128147567-128147915	GM12892	blood:	n/a	n/a
38	USF1	chr2:128147550-128147908	K562	blood:	n/a	n/a
39	SPI1	chr2:128147247-128147967	HL-60	blood:	n/a	n/a
40	SPI1	chr2:128147797-128147913	K562	blood:	n/a	n/a
41	USF1	chr2:128147699-128147884	H1-hESC	embryonic stem cell:	n/a	n/a
42	MYC	chr2:128147413-128147903	NB4	blood:	n/a	n/a
43	STAT1	chr2:128147696-128147879	GM12878	blood:	n/a	n/a
44	ATF2	chr2:128147244-128147993	GM12878	blood:	n/a	n/a

No data

Variant related genes	Relation type
MAP3K2	TF binding region

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10803585	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10928761	0.83[CHB][hapmap];0.84[JPT][hapmap]
rs11886231	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11890187	0.90[ASN][1000 genomes]
rs11901355	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12052483	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12463451	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12477214	0.91[ASN][1000 genomes]
rs12479003	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12622436	0.95[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12989081	0.95[ASN][1000 genomes]
rs12989154	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12991062	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12991768	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13026597	0.87[AFR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13026611	0.87[AFR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1566823	0.83[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs17015199	0.90[ASN][1000 genomes]
rs1799808	0.92[YRI][hapmap];0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1850689	0.95[ASN][1000 genomes]
rs2069924	0.84[EUR][1000 genomes]
rs2069931	0.82[EUR][1000 genomes]
rs2090574	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2276583	0.95[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.81[YRI][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2896980	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3088374	0.91[CEU][hapmap]
rs34832797	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35293119	0.95[ASN][1000 genomes]
rs3768866	0.95[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.81[YRI][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4150407	0.95[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs4150441	0.95[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs4150454	0.95[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs4150477	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.81[YRI][hapmap];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4150495	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4150496	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.81[YRI][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4233583	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4233584	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4497825	0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs4662575	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4662578	0.90[ASN][1000 genomes]
rs4662580	0.83[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4662717	0.95[CHB][hapmap];0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs4662722	0.91[ASN][1000 genomes]
rs4662725	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55905117	0.80[ASN][1000 genomes]
rs55998967	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59566504	0.87[ASN][1000 genomes]
rs62157549	0.90[ASN][1000 genomes]
rs62157555	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62160261	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6710535	0.82[EUR][1000 genomes]
rs6731176	0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs6732279	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[YRI][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6761447	0.90[ASN][1000 genomes]
rs7568261	0.94[ASN][1000 genomes]
rs7580658	1.00[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.86[YRI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7587639	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7589451	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs867304	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9636237	0.83[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs9789510	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:128145800-128148400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
2	chr2:128146000-128158400	Weak transcription	Ovary	ovary
3	chr2:128146200-128148000	Enhancers	Primary T cells from cord blood	blood
4	chr2:128146200-128148000	Flanking Active TSS	GM12878-XiMat	blood
5	chr2:128146200-128148200	Enhancers	Primary T cells fromperipheralblood	blood
6	chr2:128146200-128148800	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr2:128146200-128150600	Enhancers	Fetal Thymus	thymus
8	chr2:128146400-128148200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr2:128146400-128148400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr2:128146400-128148400	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr2:128146400-128148400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr2:128146400-128148400	Enhancers	Primary T killer memory cells from peripheral blood	blood
13	chr2:128146400-128148600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr2:128146400-128148600	Enhancers	Thymus	Thymus
15	chr2:128146400-128149600	Weak transcription	NH-A	brain
16	chr2:128146400-128150400	Enhancers	Primary B cells from peripheral blood	blood
17	chr2:128146400-128150400	Weak transcription	Aorta	Aorta
18	chr2:128146400-128155200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr2:128146400-128165200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr2:128146600-128148000	Enhancers	Primary T helper naive cells from peripheral blood	blood
21	chr2:128146600-128148200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
22	chr2:128146600-128148200	Weak transcription	Liver	Liver
23	chr2:128146600-128148200	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr2:128146600-128148400	Enhancers	Primary hematopoietic stem cells	blood
25	chr2:128146600-128148400	Enhancers	Rectal Mucosa Donor 31	rectum
26	chr2:128146600-128148600	Enhancers	Primary T helper cells PMA-I stimulated	--
27	chr2:128146600-128148600	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr2:128146600-128148600	Enhancers	Monocytes-CD14+_RO01746	blood
29	chr2:128146600-128149000	Enhancers	Duodenum Mucosa	Duodenum
30	chr2:128146600-128149000	Enhancers	Fetal Intestine Large	intestine
31	chr2:128146600-128149600	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr2:128146600-128149800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr2:128146600-128149800	Weak transcription	HSMM	muscle
34	chr2:128146600-128149800	Weak transcription	Osteobl	bone
35	chr2:128146600-128150000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr2:128146600-128150200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr2:128146600-128150200	Enhancers	K562	blood
38	chr2:128146600-128150600	Enhancers	Primary hematopoietic stem cells short term culture	blood
39	chr2:128146600-128150600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr2:128146600-128150800	Weak transcription	Fetal Muscle Leg	muscle
41	chr2:128146600-128152000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr2:128146600-128152000	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr2:128146600-128154200	Weak transcription	Brain Germinal Matrix	brain
44	chr2:128146600-128155000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr2:128146600-128155000	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr2:128146600-128155200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr2:128146600-128155200	Weak transcription	Esophagus	oesophagus
48	chr2:128146600-128155400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr2:128146600-128155400	Weak transcription	Brain Hippocampus Middle	brain
50	chr2:128146600-128155400	Weak transcription	Brain Substantia Nigra	brain

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