Variant report

Variant	rs13034157
Chromosome Location	chr2:128153807-128153808
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:128153413..128157536-chr2:128163810..128168101,4	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 13 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10167294	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10928764	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1143407	0.84[EUR][1000 genomes]
rs11684068	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11899601	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12613252	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12613254	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12613413	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12614320	0.84[EUR][1000 genomes]
rs12617858	0.84[EUR][1000 genomes]
rs12619391	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13017103	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13390029	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13403918	0.84[EUR][1000 genomes]
rs13409933	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13414676	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13429925	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2134794	0.84[EUR][1000 genomes]
rs2139142	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2276682	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2276683	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28807127	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34006114	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34601617	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35708549	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3738948	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4150434	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4150492	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4150506	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4150514	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4300780	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4662721	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4662724	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58063879	0.84[EUR][1000 genomes]
rs59027829	0.84[ASN][1000 genomes]
rs6430937	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6716392	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6735779	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6761391	0.93[ASN][1000 genomes]
rs67771362	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9923	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]

mRNA abundance (count:13)

SNP	Gene	Cis/trans	Tissue	Source
rs13034157	AC068282.3	cis	Artery Aorta	GTEx
rs13034157	AC068282.3	cis	Whole Blood	GTEx
rs13034157	AC068282.3	cis	lung	GTEx
rs13034157	AC068282.3	cis	Artery Tibial	GTEx
rs13034157	AC068282.3	cis	Stomach	GTEx
rs13034157	AC068282.3	cis	Skin Sun Exposed Lower leg	GTEx
rs13034157	AC068282.3	cis	Esophagus Muscularis	GTEx
rs13034157	AC068282.3	cis	Thyroid	GTEx
rs13034157	AC068282.3	cis	Nerve Tibial	GTEx
rs13034157	AC068282.3	cis	Heart Left Ventricle	GTEx
rs13034157	AC068282.3	cis	Esophagus Mucosa	GTEx
rs13034157	AC068282.3	cis	Adipose Subcutaneous	GTEx
rs13034157	AC068282.3	cis	Muscle Skeletal	GTEx

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:128146000-128158400	Weak transcription	Ovary	ovary
2	chr2:128146400-128155200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr2:128146400-128165200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr2:128146600-128154200	Weak transcription	Brain Germinal Matrix	brain
5	chr2:128146600-128155000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr2:128146600-128155000	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr2:128146600-128155200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr2:128146600-128155200	Weak transcription	Esophagus	oesophagus
9	chr2:128146600-128155400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr2:128146600-128155400	Weak transcription	Brain Hippocampus Middle	brain
11	chr2:128146600-128155400	Weak transcription	Brain Substantia Nigra	brain
12	chr2:128146600-128155400	Weak transcription	Placenta	Placenta
13	chr2:128146600-128155400	Weak transcription	Spleen	Spleen
14	chr2:128146600-128155600	Weak transcription	Brain Anterior Caudate	brain
15	chr2:128146600-128155600	Weak transcription	Colonic Mucosa	Colon
16	chr2:128146600-128157200	Weak transcription	Fetal Stomach	stomach
17	chr2:128146600-128162600	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr2:128146800-128158200	Weak transcription	Small Intestine	intestine
19	chr2:128147000-128155000	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr2:128148000-128154000	Weak transcription	Primary T cells from cord blood	blood
21	chr2:128148600-128155000	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr2:128148600-128155200	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr2:128148800-128155200	Weak transcription	GM12878-XiMat	blood
24	chr2:128148800-128155400	Weak transcription	HepG2	liver
25	chr2:128149000-128155200	Weak transcription	Fetal Intestine Large	intestine
26	chr2:128150200-128155400	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr2:128150400-128155200	Weak transcription	HSMM	muscle
28	chr2:128150400-128165000	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr2:128150600-128155200	Weak transcription	HSMMtube	muscle
30	chr2:128150600-128155400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr2:128150600-128158200	Weak transcription	Fetal Thymus	thymus
32	chr2:128150800-128155000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr2:128150800-128155400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr2:128151000-128155000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr2:128151000-128155200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr2:128151000-128155200	Weak transcription	Hela-S3	cervix
37	chr2:128151000-128155400	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr2:128151000-128155400	Weak transcription	HMEC	breast
39	chr2:128151000-128155400	Weak transcription	Osteobl	bone
40	chr2:128151200-128155200	Weak transcription	K562	blood
41	chr2:128152000-128158200	Weak transcription	Primary B cells from peripheral blood	blood
42	chr2:128152200-128155000	Weak transcription	Fetal Muscle Leg	muscle
43	chr2:128152200-128155400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr2:128152400-128155200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr2:128152400-128155600	Weak transcription	Lung	lung
46	chr2:128152400-128155800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
47	chr2:128152400-128158200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr2:128152600-128155200	Weak transcription	Fetal Intestine Small	intestine
49	chr2:128152600-128155200	Weak transcription	A549	lung
50	chr2:128152600-128165800	Weak transcription	Aorta	Aorta

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