Variant report

Variant	rs13036190
Chromosome Location	chr2:134489783-134489784
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:134488907..134491091-chr20:55839209..55841461,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000101144	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10184200	0.82[ASN][1000 genomes]
rs10496713	0.82[ASN][1000 genomes]
rs11884849	1.00[ASN][1000 genomes]
rs11888079	1.00[ASN][1000 genomes]
rs12691846	0.82[ASN][1000 genomes]
rs12989658	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12993296	1.00[ASN][1000 genomes]
rs12993449	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12995146	1.00[ASN][1000 genomes]
rs12996062	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12996450	0.82[ASN][1000 genomes]
rs12996471	0.82[ASN][1000 genomes]
rs12998809	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12998999	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13002440	0.82[ASN][1000 genomes]
rs13007239	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13008209	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13011121	1.00[ASN][1000 genomes]
rs13013221	1.00[ASN][1000 genomes]
rs13013946	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13015979	1.00[ASN][1000 genomes]
rs13017617	0.82[ASN][1000 genomes]
rs13028951	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13032020	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13032581	1.00[ASN][1000 genomes]
rs13033059	1.00[ASN][1000 genomes]
rs1374405	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1446752	1.00[ASN][1000 genomes]
rs1562348	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1584239	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1867897	1.00[ASN][1000 genomes]
rs1869054	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34454875	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35961497	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36066383	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4256007	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4440017	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4536693	1.00[ASN][1000 genomes]
rs62166124	0.82[ASN][1000 genomes]
rs62167107	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6716182	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6716309	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6726369	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6726463	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7568394	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7568496	1.00[ASN][1000 genomes]
rs7574116	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9917166	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003624	chr2:134126928-134583203	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1006101	chr2:134263288-134973917	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1013713	chr2:134322236-134644574	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv535931	chr2:134322236-134644574	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:134485000-134490600	Weak transcription	Fetal Muscle Leg	muscle
2	chr2:134485000-134492400	Weak transcription	Right Atrium	heart
3	chr2:134485200-134490600	Weak transcription	Brain Hippocampus Middle	brain
4	chr2:134485200-134490600	Weak transcription	Osteobl	bone
5	chr2:134485200-134490800	Weak transcription	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links