Variant report

Variant	rs13059265
Chromosome Location	chr3:143417498-143417499
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10513216	0.91[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10935500	0.90[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1242054	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1242057	0.87[ASN][1000 genomes]
rs12629688	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs1345170	0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs1447741	0.90[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16853999	0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs16854008	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1868174	0.93[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1868175	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1868177	0.95[ASN][1000 genomes]
rs2121777	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs4839649	0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs4839650	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs4839651	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs57630925	0.87[ASN][1000 genomes]
rs57917966	0.87[ASN][1000 genomes]
rs58441250	0.87[ASN][1000 genomes]
rs58652978	0.87[ASN][1000 genomes]
rs60098452	0.87[ASN][1000 genomes]
rs60428559	0.85[ASN][1000 genomes]
rs60633318	0.87[ASN][1000 genomes]
rs60891486	0.95[ASN][1000 genomes]
rs61645302	0.87[ASN][1000 genomes]
rs62269851	0.85[ASN][1000 genomes]
rs62269855	0.87[ASN][1000 genomes]
rs62269856	0.87[ASN][1000 genomes]
rs62270560	0.87[ASN][1000 genomes]
rs6440181	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs6774032	0.87[CEU][hapmap];0.81[JPT][hapmap];0.80[EUR][1000 genomes]
rs6782154	0.90[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs6786893	0.81[EUR][1000 genomes]
rs6786896	0.81[EUR][1000 genomes]
rs6803893	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7629784	0.87[ASN][1000 genomes]
rs7629855	0.87[ASN][1000 genomes]
rs7650371	0.91[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7650396	0.94[ASN][1000 genomes]
rs935519	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs935520	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9831286	0.90[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs9844600	0.94[ASN][1000 genomes]
rs9882472	0.91[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv877566	chr3:143397740-143421221	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143370800-143420800	Weak transcription	Primary T cells from cord blood	blood
2	chr3:143394200-143470200	Weak transcription	Primary B cells from cord blood	blood
3	chr3:143407600-143417600	Weak transcription	Fetal Lung	lung
4	chr3:143416200-143418200	Enhancers	Brain Cingulate Gyrus	brain
5	chr3:143416400-143418800	Enhancers	Brain Substantia Nigra	brain
6	chr3:143416600-143417600	Enhancers	Pancreatic Islets	Pancreatic Islet
7	chr3:143416800-143417600	Enhancers	Brain Angular Gyrus	brain
8	chr3:143416800-143419000	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr3:143416800-143419000	Enhancers	Ovary	ovary
10	chr3:143416800-143419200	Enhancers	Brain Anterior Caudate	brain
11	chr3:143417000-143418600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr3:143417000-143418600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr3:143417200-143419400	Enhancers	Brain Hippocampus Middle	brain

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