Variant report

Variant	rs13060062
Chromosome Location	chr3:142433707-142433708
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11929069	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13064897	0.85[EUR][1000 genomes]
rs13081200	0.84[AMR][1000 genomes]
rs13087943	0.96[EUR][1000 genomes]
rs13092601	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13094259	0.84[AMR][1000 genomes]
rs1916638	0.92[EUR][1000 genomes]
rs34485065	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34941168	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs55968753	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62278490	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62278492	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62278493	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62278495	0.84[AMR][1000 genomes]
rs62278498	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv591920	chr3:142411200-142496951	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv521098	chr3:142411200-142503605	Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv520533	chr3:142417070-142440299	Weak transcription Strong transcription Enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv518623	chr3:142417070-142503605	Weak transcription Active TSS Enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:142366000-142435400	Weak transcription	Colonic Mucosa	Colon
2	chr3:142389800-142442400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr3:142426200-142435000	Weak transcription	Fetal Intestine Large	intestine
4	chr3:142429400-142442400	Weak transcription	NH-A	brain
5	chr3:142429600-142442200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr3:142431600-142442400	Weak transcription	Duodenum Mucosa	Duodenum
7	chr3:142431800-142442600	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr3:142433200-142437200	Weak transcription	Rectal Mucosa Donor 29	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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