Variant report

Variant	rs13060347
Chromosome Location	chr3:25194301-25194302
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs13061437	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13068891	1.00[ASW][hapmap];1.00[CEU][hapmap];0.90[TSI][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13087919	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13088163	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17517792	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17517931	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17578259	0.85[EUR][1000 genomes]
rs34112261	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34283888	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34370374	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35045659	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35069077	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35383710	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs66692109	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs71311526	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs71622827	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73050342	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9830836	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013446	chr3:25176609-25221334	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv876631	chr3:25185448-25231571	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv949035	chr3:25194301-26084890	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	68 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:25190600-25194400	Weak transcription	Fetal Heart	heart
2	chr3:25191000-25194400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr3:25191400-25194600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:25191400-25195200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr3:25192600-25194600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr3:25192800-25197600	Weak transcription	Brain Angular Gyrus	brain
7	chr3:25192800-25198200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr3:25192800-25198200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr3:25193200-25194600	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr3:25193200-25196200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr3:25193400-25194400	Weak transcription	Fetal Lung	lung
12	chr3:25193400-25194600	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr3:25193400-25194600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr3:25193400-25194600	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr3:25193400-25194800	Enhancers	Fetal Brain Male	brain
16	chr3:25193400-25197200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr3:25193400-25197200	Weak transcription	NH-A	brain
18	chr3:25193400-25197600	Weak transcription	Brain Anterior Caudate	brain
19	chr3:25193400-25197800	Weak transcription	Fetal Stomach	stomach
20	chr3:25193400-25197800	Weak transcription	Rectal Smooth Muscle	rectum
21	chr3:25193600-25194600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr3:25193600-25197000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr3:25193600-25197200	Weak transcription	Fetal Muscle Leg	muscle
24	chr3:25193600-25197400	Weak transcription	NHDF-Ad	bronchial
25	chr3:25193600-25197600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr3:25193800-25194600	Weak transcription	Right Atrium	heart
27	chr3:25193800-25194800	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr3:25193800-25195000	Enhancers	HUVEC	blood vessel
29	chr3:25193800-25196800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr3:25193800-25197200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr3:25193800-25197400	Weak transcription	Osteobl	bone
32	chr3:25194000-25197400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr3:25194000-25197600	Enhancers	ES-I3 Cell Line	embryonic stem cell
34	chr3:25194000-25197600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr3:25194000-25211800	Weak transcription	Aorta	Aorta

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