Variant report

Variant rs13062540
Chromosome Location chr3:119395413-119395414
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:127 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:119393600-119395600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
2 chr3:119393600-119395600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
3 chr3:119393600-119395600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
4 chr3:119393600-119395600 Weak transcription Esophagus oesophagus
5 chr3:119393600-119395600 Weak transcription Gastric stomach
6 chr3:119393600-119395600 Weak transcription Lung lung
7 chr3:119393600-119395600 Weak transcription Pancreas Pancrea
8 chr3:119393600-119395600 Weak transcription Spleen Spleen
9 chr3:119394600-119395600 Flanking Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
10 chr3:119394600-119395600 Flanking Active TSS Duodenum Smooth Muscle Duodenum
11 chr3:119394600-119395600 Enhancers Small Intestine intestine
12 chr3:119394600-119395600 Flanking Active TSS Dnd41 blood
13 chr3:119394600-119395800 Flanking Active TSS Skeletal Muscle Male skeletal muscle
14 chr3:119394600-119396600 Active TSS Left Ventricle heart
15 chr3:119394800-119395600 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
16 chr3:119394800-119395600 Flanking Active TSS Brain Angular Gyrus brain
17 chr3:119394800-119395600 Flanking Active TSS Brain Anterior Caudate brain
18 chr3:119394800-119395800 Flanking Active TSS Primary hematopoietic stem cells short term culture blood
19 chr3:119394800-119395800 Flanking Active TSS Primary T helper cells PMA-I stimulated --
20 chr3:119394800-119395800 Flanking Active TSS Liver Liver
21 chr3:119394800-119395800 Flanking Active TSS Duodenum Mucosa Duodenum
22 chr3:119394800-119395800 Flanking Active TSS Rectal Smooth Muscle rectum
23 chr3:119394800-119395800 Flanking Active TSS Skeletal Muscle Female skeletal muscle
24 chr3:119394800-119396600 Active TSS GM12878-XiMat blood
25 chr3:119394800-119396800 Active TSS HUES64 Cell Line embryonic stem cell
26 chr3:119394800-119396800 Active TSS Colonic Mucosa Colon
27 chr3:119394800-119396800 Active TSS Psoas Muscle Psoas
28 chr3:119394800-119396800 Active TSS Right Ventricle heart
29 chr3:119395000-119395600 Flanking Active TSS Primary T helper naive cells from peripheral blood blood
30 chr3:119395000-119395600 Flanking Active TSS Colon Smooth Muscle Colon
31 chr3:119395000-119395600 Flanking Active TSS Thymus Thymus
32 chr3:119395000-119395600 Flanking Active TSS NH-A brain
33 chr3:119395000-119395600 Flanking Active TSS NHLF lung
34 chr3:119395000-119395800 Flanking Active TSS Primary T cells from cord blood blood
35 chr3:119395000-119395800 Flanking Active TSS Primary T helper naive cells fromperipheralblood blood
36 chr3:119395000-119395800 Flanking Active TSS Fetal Kidney kidney
37 chr3:119395000-119395800 Flanking Active TSS Fetal Stomach stomach
38 chr3:119395000-119395800 Flanking Active TSS Rectal Mucosa Donor 31 rectum
39 chr3:119395000-119395800 Flanking Active TSS Monocytes-CD14+_RO01746 blood
40 chr3:119395000-119396000 Active TSS Right Atrium heart
41 chr3:119395000-119396400 Active TSS Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
42 chr3:119395000-119396400 Active TSS Foreskin Keratinocyte Primary Cells skin03 Skin
43 chr3:119395000-119396400 Active TSS Fetal Heart heart
44 chr3:119395000-119396600 Active TSS Fetal Intestine Large intestine
45 chr3:119395000-119396600 Active TSS HSMM muscle
46 chr3:119395000-119396800 Active TSS H1 Cell Line embryonic stem cell
47 chr3:119395000-119396800 Active TSS HUES48 Cell Line embryonic stem cell
48 chr3:119395000-119396800 Active TSS Foreskin Melanocyte Primary Cells skin01 Skin
49 chr3:119395000-119396800 Active TSS Fetal Thymus thymus
50 chr3:119395000-119397000 Active TSS ES-WA7 Cell Line embryonic stem cell

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